From c2e5a59a33c81666f20388e25c01679e145ed64a Mon Sep 17 00:00:00 2001 From: Anthony Gitter Date: Fri, 21 Feb 2020 10:47:05 -0600 Subject: [PATCH 1/2] Prepare version 0.4.1 release --- NEWS.md | 7 +++++++ code/SINGE.m | 2 +- 2 files changed, 8 insertions(+), 1 deletion(-) diff --git a/NEWS.md b/NEWS.md index 58231ff..6ce23cf 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,10 @@ +# Version 0.4.1 +Version 0.4.1 fixes a bug that occurred when multiple GLG tests were run in parallel with a shared file system. +The same temporary .mat file was overwritten by different GLG tests. +Now, each GLG test includes the ID hyperparameter in the temporary .mat filename. + +Thank you [@PayamDiba](https://github.com/PayamDiba) for reporting this issue. + # Version 0.4.0 Changes in version 0.4.0 include: - Support three modes of execution: MATLAB, compiled MATLAB executables with MATLAB runtime, or Docker diff --git a/code/SINGE.m b/code/SINGE.m index b8792cb..721f194 100644 --- a/code/SINGE.m +++ b/code/SINGE.m @@ -8,7 +8,7 @@ % aggregation % hyperparameter_file = file path to text file containing all % hyperparameters -SINGE_version = '0.4.0'; +SINGE_version = '0.4.1'; display(SINGE_version); fid = fopen(hyperparameter_file); From 9bd25d9a6b268904c226b85f17e36fc071f07015 Mon Sep 17 00:00:00 2001 From: Anthony Gitter Date: Fri, 21 Feb 2020 10:55:21 -0600 Subject: [PATCH 2/2] Update executables in Dockerfile --- docker/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/Dockerfile b/docker/Dockerfile index 91a3f70..27788cf 100644 --- a/docker/Dockerfile +++ b/docker/Dockerfile @@ -46,7 +46,7 @@ ENV SINGE_RUNNING_IN_DOCKER 1 # Download an intermediate version of the compiled SINGE executables for testing # Download the md5sums of the source .m files and binaries -RUN md5=cbe289c204defe48f1a69fbe5326af0e && \ +RUN md5=c50ec7bc13e287eca340c9d19d8bc27d && \ wget --quiet https://www.biostat.wisc.edu/~gitter/tmp/$md5/SINGE_Test && \ wget --quiet https://www.biostat.wisc.edu/~gitter/tmp/$md5/SINGE_GLG_Test && \ wget --quiet https://www.biostat.wisc.edu/~gitter/tmp/$md5/SINGE_Aggregate && \