diff --git a/CHANGELOG.md b/CHANGELOG.md index da8f3dfdab..578fabb449 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,6 +18,7 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/) - IGV.js WTS loci default to zoom to a region around a variant instead of whole gene - Refactored logging module - Case general report no longer shows ORPHA inheritance models. OMIM models are shown colored. +- Chromosome alias tab files used in the igv.js browser, which now contain the alias for chromosome "M" ### Fixed - Broken heading anchors in the documentation (`admin-guide/login-system.md` and `admin-guide/setup-scout.md` files) - Avoid open login redirect attacks by always redirecting to cases page upon user login diff --git a/scout/constants/igv_tracks.py b/scout/constants/igv_tracks.py index 9f443b9dcf..86b143bee9 100644 --- a/scout/constants/igv_tracks.py +++ b/scout/constants/igv_tracks.py @@ -4,11 +4,11 @@ ) HG19REF_INDEX_URL = "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/1kg_v37/human_g1k_v37_decoy.fasta.fai" HG19CYTOBAND_URL = "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/cytoBand.txt" -HG19ALIAS_URL = "https://s3.amazonaws.com/igv.org.genomes/hg19/hg19_alias.tab" +HG19ALIAS_URL = "https://igv.org/genomes/data/hg19/hg19_alias.tab" HG38REF_URL = "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg38/hg38.fa" HG38REF_INDEX_URL = "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg38/hg38.fa.fai" -HG38ALIAS_URL = "https://s3.amazonaws.com/igv.org.genomes/hg38/hg38_alias.tab" +HG38ALIAS_URL = "https://igv.org/genomes/data/hg38/hg38_alias.tab" HG38CYTOBAND_URL = ( "https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg38/cytoBandIdeo.txt" )