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Build an ensemblemerge conda package #62

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gongx030 opened this issue Dec 19, 2022 · 3 comments
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Build an ensemblemerge conda package #62

gongx030 opened this issue Dec 19, 2022 · 3 comments
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@gongx030
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gongx030 commented Dec 19, 2022

  • Following R or Python packages have no conda version. Considering dropping the supports for these tools.
scCATCH >=3.0
scCCESS >=0.2.0
scLCA >=0.0.0.9000
Spectrum >= 1.1
DoubletFinder>=2.0.3
symphony >= 0.1.0
  • boa was used to build the conda package. In comparison, conda build produced the following error:
ValueError: Incompatible component merge:
      - 'mpi_openmpi_*'
      - 'mpi_openmpi_tempest*'

It appears that boa should resolve this issue. see conda/conda-build#4498 (comment).

  • Build conda package:
conda mambabuild r-ensemblemerge
  • Test newly built package:
mamba install --use-local r-ensemblemerge
@gongx030 gongx030 added the conda label Dec 19, 2022
@gongx030
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gongx030 commented Dec 22, 2022

There is error of installing conda package of genomeinfodbdata 1.2.9:

An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0'.

Build a new conda package for bioconductor-genomeinfodbdata

mamba skeleton cran https://github.com/immunogenomics/symphony

@gongx030
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Build a new conda package for symphony:

mamba skeleton cran https://github.com/immunogenomics/symphony

@gongx030
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Several conflicting issues that are difficult to resolve. Use docker solution instead (see #63).

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