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This actually works fine, and gives the output I want, except at the top of parallel.fastq is all of the normal R output that happens when libraries are loaded, eg:
Loading required package: plyr
loaded plyr and set parent environment
Loading required package: rhdf5
Loading required package: plyr
loaded plyr and set parent environmen
as well as a couple of other messages:
starting worker pid=15480 on localhost:11214 at 21:08:07.376
starting worker pid=15489 on localhost:11214 at 21:08:07.745
Basically what I want is for all of this output to be suppressed, but the output from my function to remain.
Is this possible?
Cheers
Mick
The text was updated successfully, but these errors were encountered:
Hi
I'm using doParallel to create the cluster, directing output to a file:
workers=makeCluster(2, outfile="parallel.fastq")
Then running a_ply to apply a function to a bunch of files:
a_ply(array(f5files), 1, extractfastq, .print=TRUE, .parallel=TRUE, .paropts=list(.packages=c("poRe","bit64","rhdf5")))
This actually works fine, and gives the output I want, except at the top of parallel.fastq is all of the normal R output that happens when libraries are loaded, eg:
Loading required package: plyr
loaded plyr and set parent environment
Loading required package: rhdf5
Loading required package: plyr
loaded plyr and set parent environmen
as well as a couple of other messages:
starting worker pid=15480 on localhost:11214 at 21:08:07.376
starting worker pid=15489 on localhost:11214 at 21:08:07.745
Basically what I want is for all of this output to be suppressed, but the output from my function to remain.
Is this possible?
Cheers
Mick
The text was updated successfully, but these errors were encountered: