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cde_template.yaml
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cde_template.yaml
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# Template generated using v1.0.
# Source mapping file: "templating_data/radx_global_cookbook.csv".
#
# 133 variables and 3985 possible responses.
#
# Don't change any `response_name` or `response_value` values!
# For responses, only `frequency` (and `response_value_generator` for text/integers) should be modified.
#
# Notes:
# - All responses under a variable with {frequency: null} will have the remaining frequency distribution divided evenly between them.
# For example, a variable "nih_example" has four responses: foo{frequency: 0.4}, bar{frequency: 0.3}, egg{frequency: null}, spam{frequency: null}
# At generation time, egg and spam will have the remaining 0.3 frequency divided evenly between them: egg{frequency: 0.15}, spam{frequency: 0.15}
# - Special responses: `text`, `integer`.
# These responses do not have a preassigned "response_value" and require extra configuration to generate such a value.
# integer:
# // Choose between (prioritization: range > valid_inputs)
# range: [min, max] // generates a random integer in inclusive range [min, max]
# valid_inputs: int[] // chooses a random integer in list.
# text:
# // Choose between (prioritization: lorem > valid_inputs)
# lorem: // generates random lorem ipsum text
# num_sentences: [min, max] // number of sentences (inclusive range)
# sentence_length: [min, max] // word length (inclusive range)
# valid_inputs: str[] // chooses a random string in list.
# - For additional clarification on the structure of template files, refer to template_schema.json, which is the jsonschema specification
# for template files.
# How many records of data to generate. If null, `generate.py` will expect [-n ROW_COUNT] argument to be specified.
row_count: 5000
# File name/path to output the data under (or `null` to auto-generate a name). Can be overriden by [-o OUTPUT_PATH] argument.
output_path: RADx_Tier1CDE_SampleData_V1.csv
relationships: global_relationships.yaml
variables:
nih_record_id:
- response_name: text
response_value_generator:
udf:
name: test_record_id
frequency: 1.0
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_race:
- response_name: American Indian or Alaska Native
response_value: 0
frequency: 0.01
- response_name: Black or African American
response_value: 1
frequency: 0.12
- response_name: Asian
response_value: 2
frequency: 0.06
- response_name: Native Hawaiian or Other Pacific Islander
response_value: 3
frequency: 0.005
- response_name: White
response_value: 4
frequency: 0.62
- response_name: Middle Eastern or North African
response_value: 5
frequency: 0.005
- response_name: Two or more races
response_value: 6
frequency: 0.10
- response_name: Some other race
response_value: 97
frequency: 0.01
- response_name: Do not know
response_value: 98
frequency: 0.01
- response_name: Prefer not to answer
response_value: 99
frequency: 0.03
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_ethnicity:
- response_name: No, not of Hispanic or Latino origin
response_value: 0
frequency: 0.80
- response_name: Yes, of Hispanic or Latino origin
response_value: 1
frequency: 0.18
- response_name: Other
response_value: 97
frequency: null
- response_name: Don't Know
response_value: 98
frequency: null
- response_name: Prefer not to answer
response_value: 99
frequency: 0.01
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: 0.01
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_age:
- response_name: text
# Requires special configuration.
response_value_generator:
udf:
name: age_generator
kwargs:
min_age: 18
max_age: 100
frequency: .95
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_sex:
- response_name: Female
response_value: 0
frequency: 0.49
- response_name: Male
response_value: 1
frequency: 0.48
- response_name: Intersex
response_value: 2
frequency: 0.005
- response_name: Non-binary
response_value: 3
frequency: 0
- response_name: None of these describe me
response_value: 96
frequency: 0
- response_name: Prefer not to answer
response_value: 99
frequency: 0.01
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_education:
- response_name: Have never gone to school
response_value: 0
frequency: 0.005
- response_name: Some school (Includes any education received below highschool
graduate level)
response_value: 1
frequency: 0.075
- response_name: High school graduate or GED completed
response_value: 2
frequency: 0.26
- response_name: Some college (graduated or not), associates degree, technical
degree, or vocational degree
response_value: 3
frequency: 0.25
- response_name: Bachelor's degree
response_value: 4
frequency: 0.24
- response_name: Other advanced degree (Master's, Doctorate, or Professional Doctorate)
response_value: 5
frequency: 0.14
- response_name: Other
response_value: 97
frequency: null
- response_name: Don't know
response_value: 98
frequency: null
- response_name: Prefer not to answer
response_value: 99
frequency: null
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_education_yrs:
- response_name: text
# Requires special configuration.
response_value_generator:
# Generates pseudo-Latin text.
lorem:
num_sentences:
# Minimum number of sentences
- 1
# Maximum number of sentences
- 2
sentence_length:
# Minimum number of words per sentence
- 1
# Maximum number of words per sentence
- 10
# Randomly chooses a value from the list. Example: ['a', 'b', 'c'] or [1, 2, 3]
valid_inputs: null
frequency: 0
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: 1.0
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_zip:
- response_name: text
# Requires special configuration.
response_value_generator:
udf:
name: zip_code_generator
frequency: .95
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_employment:
- response_name: Yes - Employed
response_value: 0
frequency: 0.56
- response_name: No - Not Employed
response_value: 1
frequency: 0.04
- response_name: Student
response_value: 2
frequency: 0.05
- response_name: Keeping household
response_value: 3
frequency: 0.15
- response_name: Retired
response_value: 4
frequency: 0.15
- response_name: Disabled or government support
response_value: 5
frequency: 0.03
- response_name: Other
response_value: 97
frequency: null
- response_name: Don’t know
response_value: 98
frequency: null
- response_name: Prefer not to answer
response_value: 99
frequency: null
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_insurance:
- response_name: None
response_value: 0
frequency: 0.09
- response_name: Private
response_value: 1
frequency: 0.54
- response_name: Public
response_value: 2
frequency: 0.35
- response_name: Other
response_value: 97
frequency: null
- response_name: Don't know
response_value: 98
frequency: 0.02
- response_name: Prefer not to answer
response_value: 99
frequency: null
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null
- response_name: Data Lost Or Inaccessible
response_value: -9984
frequency: null
- response_name: Data Invalid
response_value: -9985
frequency: null
- response_name: Anonymization Or Privacy Concerns
response_value: -9986
frequency: null
- response_name: Other Unsent Reason Not Specified
response_value: -9987
frequency: null
- response_name: Not Entered By Originator
response_value: -9960
frequency: null
- response_name: Omitted This Value
response_value: -9961
frequency: null
- response_name: Originator Chose to Omit
response_value: -9962
frequency: null
- response_name: Question Not Applicable
response_value: -9963
frequency: null
- response_name: Answer Not Known
response_value: -9964
frequency: null
- response_name: Record Not Provided
response_value: -9965
frequency: null
- response_name: All Originators Omitted Element
response_value: -9966
frequency: null
- response_name: CDE Omitted With Exception
response_value: -9967
frequency: null
- response_name: Other Unentered Reason Not Specified
response_value: -9968
frequency: null
- response_name: Not Presented To Participant
response_value: -9940
frequency: null
- response_name: Skip Logic
response_value: -9941
frequency: null
- response_name: No Participant Consent to Ask
response_value: -9942
frequency: null
- response_name: CDE Not Presented Due to Exception
response_value: -9943
frequency: null
- response_name: Element Never Presented for Collection
response_value: -9944
frequency: null
- response_name: Process Error
response_value: -9945
frequency: null
- response_name: Other Unpresented Reason Not Specified
response_value: -9946
frequency: null
nih_disability:
- response_name: No
response_value: 0
frequency: 0.8
- response_name: Yes
response_value: 1
frequency: 0.12
- response_name: Other
response_value: 97
frequency: null
- response_name: Don’t know
response_value: 98
frequency: null
- response_name: Prefer not to answer
response_value: 99
frequency: 0.05
- response_name: Reason Unknown
response_value: -9999
frequency: null
- response_name: Not Sent to Data Hub
response_value: -9980
frequency: null
- response_name: Data Transfer Agreement
response_value: -9981
frequency: null
- response_name: No Participant Consent To Share
response_value: -9982
frequency: null
- response_name: Not Available Or Mappable
response_value: -9983
frequency: null