diff --git a/examples/Carbon_Flux.ipynb b/examples/Carbon_Flux.ipynb
index 5c1c03f..0e4dfbc 100644
--- a/examples/Carbon_Flux.ipynb
+++ b/examples/Carbon_Flux.ipynb
@@ -9,9 +9,1531 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 16,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "application/javascript": [
+ "\n",
+ "(function(root) {\n",
+ " function now() {\n",
+ " return new Date();\n",
+ " }\n",
+ "\n",
+ " var force = true;\n",
+ "\n",
+ " if (typeof (root._bokeh_onload_callbacks) === \"undefined\" || force === true) {\n",
+ " root._bokeh_onload_callbacks = [];\n",
+ " root._bokeh_is_loading = undefined;\n",
+ " }\n",
+ "\n",
+ " var JS_MIME_TYPE = 'application/javascript';\n",
+ " var HTML_MIME_TYPE = 'text/html';\n",
+ " var EXEC_MIME_TYPE = 'application/vnd.bokehjs_exec.v0+json';\n",
+ " var CLASS_NAME = 'output_bokeh rendered_html';\n",
+ "\n",
+ " /**\n",
+ " * Render data to the DOM node\n",
+ " */\n",
+ " function render(props, node) {\n",
+ " var script = document.createElement(\"script\");\n",
+ " node.appendChild(script);\n",
+ " }\n",
+ "\n",
+ " /**\n",
+ " * Handle when an output is cleared or removed\n",
+ " */\n",
+ " function handleClearOutput(event, handle) {\n",
+ " var cell = handle.cell;\n",
+ "\n",
+ " var id = cell.output_area._bokeh_element_id;\n",
+ " var server_id = cell.output_area._bokeh_server_id;\n",
+ " // Clean up Bokeh references\n",
+ " if (id !== undefined) {\n",
+ " Bokeh.index[id].model.document.clear();\n",
+ " delete Bokeh.index[id];\n",
+ " }\n",
+ "\n",
+ " if (server_id !== undefined) {\n",
+ " // Clean up Bokeh references\n",
+ " var cmd = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n",
+ " cell.notebook.kernel.execute(cmd, {\n",
+ " iopub: {\n",
+ " output: function(msg) {\n",
+ " var element_id = msg.content.text.trim();\n",
+ " Bokeh.index[element_id].model.document.clear();\n",
+ " delete Bokeh.index[element_id];\n",
+ " }\n",
+ " }\n",
+ " });\n",
+ " // Destroy server and session\n",
+ " var cmd = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n",
+ " cell.notebook.kernel.execute(cmd);\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " /**\n",
+ " * Handle when a new output is added\n",
+ " */\n",
+ " function handleAddOutput(event, handle) {\n",
+ " var output_area = handle.output_area;\n",
+ " var output = handle.output;\n",
+ "\n",
+ " // limit handleAddOutput to display_data with EXEC_MIME_TYPE content only\n",
+ " if ((output.output_type != \"display_data\") || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
+ " return\n",
+ " }\n",
+ "\n",
+ " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
+ "\n",
+ " if (output.metadata[EXEC_MIME_TYPE][\"id\"] !== undefined) {\n",
+ " toinsert[toinsert.length - 1].firstChild.textContent = output.data[JS_MIME_TYPE];\n",
+ " // store reference to embed id on output_area\n",
+ " output_area._bokeh_element_id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
+ " }\n",
+ " if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
+ " var bk_div = document.createElement(\"div\");\n",
+ " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
+ " var script_attrs = bk_div.children[0].attributes;\n",
+ " for (var i = 0; i < script_attrs.length; i++) {\n",
+ " toinsert[toinsert.length - 1].firstChild.setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
+ " }\n",
+ " // store reference to server id on output_area\n",
+ " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " function register_renderer(events, OutputArea) {\n",
+ "\n",
+ " function append_mime(data, metadata, element) {\n",
+ " // create a DOM node to render to\n",
+ " var toinsert = this.create_output_subarea(\n",
+ " metadata,\n",
+ " CLASS_NAME,\n",
+ " EXEC_MIME_TYPE\n",
+ " );\n",
+ " this.keyboard_manager.register_events(toinsert);\n",
+ " // Render to node\n",
+ " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
+ " render(props, toinsert[toinsert.length - 1]);\n",
+ " element.append(toinsert);\n",
+ " return toinsert\n",
+ " }\n",
+ "\n",
+ " /* Handle when an output is cleared or removed */\n",
+ " events.on('clear_output.CodeCell', handleClearOutput);\n",
+ " events.on('delete.Cell', handleClearOutput);\n",
+ "\n",
+ " /* Handle when a new output is added */\n",
+ " events.on('output_added.OutputArea', handleAddOutput);\n",
+ "\n",
+ " /**\n",
+ " * Register the mime type and append_mime function with output_area\n",
+ " */\n",
+ " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
+ " /* Is output safe? */\n",
+ " safe: true,\n",
+ " /* Index of renderer in `output_area.display_order` */\n",
+ " index: 0\n",
+ " });\n",
+ " }\n",
+ "\n",
+ " // register the mime type if in Jupyter Notebook environment and previously unregistered\n",
+ " if (root.Jupyter !== undefined) {\n",
+ " var events = require('base/js/events');\n",
+ " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
+ "\n",
+ " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
+ " register_renderer(events, OutputArea);\n",
+ " }\n",
+ " }\n",
+ "\n",
+ " \n",
+ " if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
+ " root._bokeh_timeout = Date.now() + 5000;\n",
+ " root._bokeh_failed_load = false;\n",
+ " }\n",
+ "\n",
+ " var NB_LOAD_WARNING = {'data': {'text/html':\n",
+ " \"
\\n\"+\n",
+ " \"
\\n\"+\n",
+ " \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
+ " \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
+ " \"
\\n\"+\n",
+ " \"
\\n\"+\n",
+ " \"- re-rerun `output_notebook()` to attempt to load from CDN again, or
\\n\"+\n",
+ " \"- use INLINE resources instead, as so:
\\n\"+\n",
+ " \"
\\n\"+\n",
+ " \"
\\n\"+\n",
+ " \"from bokeh.resources import INLINE\\n\"+\n",
+ " \"output_notebook(resources=INLINE)\\n\"+\n",
+ " \"
\\n\"+\n",
+ " \"
\"}};\n",
+ "\n",
+ " function display_loaded() {\n",
+ " var el = document.getElementById(null);\n",
+ " if (el != null) {\n",
+ " el.textContent = \"BokehJS is loading...\";\n",
+ " }\n",
+ " if (root.Bokeh !== undefined) {\n",
+ " if (el != null) {\n",
+ " el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n",
+ " }\n",
+ " } else if (Date.now() < root._bokeh_timeout) {\n",
+ " setTimeout(display_loaded, 100)\n",
+ " }\n",
+ " }\n",
+ "\n",
+ "\n",
+ " function run_callbacks() {\n",
+ " try {\n",
+ " root._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
+ " }\n",
+ " finally {\n",
+ " delete root._bokeh_onload_callbacks\n",
+ " }\n",
+ " console.info(\"Bokeh: all callbacks have finished\");\n",
+ " }\n",
+ "\n",
+ " function load_libs(js_urls, callback) {\n",
+ " root._bokeh_onload_callbacks.push(callback);\n",
+ " if (root._bokeh_is_loading > 0) {\n",
+ " console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
+ " return null;\n",
+ " }\n",
+ " if (js_urls == null || js_urls.length === 0) {\n",
+ " run_callbacks();\n",
+ " return null;\n",
+ " }\n",
+ " console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
+ " root._bokeh_is_loading = js_urls.length;\n",
+ " for (var i = 0; i < js_urls.length; i++) {\n",
+ " var url = js_urls[i];\n",
+ " var s = document.createElement('script');\n",
+ " s.src = url;\n",
+ " s.async = false;\n",
+ " s.onreadystatechange = s.onload = function() {\n",
+ " root._bokeh_is_loading--;\n",
+ " if (root._bokeh_is_loading === 0) {\n",
+ " console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
+ " run_callbacks()\n",
+ " }\n",
+ " };\n",
+ " s.onerror = function() {\n",
+ " console.warn(\"failed to load library \" + url);\n",
+ " };\n",
+ " console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
+ " document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
+ " }\n",
+ " };\n",
+ "\n",
+ " var js_urls = [];\n",
+ "\n",
+ " var inline_js = [\n",
+ " function(Bokeh) {\n",
+ " /* BEGIN bokeh.min.js */\n",
+ " !function(t,e){t.Bokeh=function(t,e,i){var n={},r=function(i){var o=null!=e[i]?e[i]:i;if(!n[o]){if(!t[o]){var s=new Error(\"Cannot find module '\"+i+\"'\");throw s.code=\"MODULE_NOT_FOUND\",s}var a=n[o]={exports:{}};t[o].call(a.exports,r,a,a.exports)}return n[o].exports},o=r(52);return o.require=r,o.register_plugin=function(i,n,s){for(var a in i)t[a]=i[a];for(var a in n)e[a]=n[a];var l=r(s);for(var a in l)o[a]=l[a];return l},o}([function(t,e,i){var n=t(142),r=t(32);i.overrides={};var o=r.clone(n);i.Models=function(t){var e=i.overrides[t]||o[t];if(null==e)throw new Error(\"Model '\"+t+\"' does not exist. This could be due to a widget\\n or a custom model not being registered before first usage.\");return e},i.Models.register=function(t,e){i.overrides[t]=e},i.Models.unregister=function(t){delete i.overrides[t]},i.Models.register_models=function(t,e,i){if(void 0===e&&(e=!1),null!=t)for(var n in t){var r=t[n];e||!o.hasOwnProperty(n)?o[n]=r:null!=i?i(n):console.warn(\"Model '\"+n+\"' was already registered\")}},i.register_models=i.Models.register_models,i.Models.registered_names=function(){return Object.keys(o)},i.index={}},function(t,e,i){var n=t(319),r=t(14),o=t(50),s=t(262),a=t(263),l=t(2);i.DEFAULT_SERVER_WEBSOCKET_URL=\"ws://localhost:5006/ws\",i.DEFAULT_SESSION_ID=\"default\";var h=0,c=function(){function t(t,e,n,o,s){void 0===t&&(t=i.DEFAULT_SERVER_WEBSOCKET_URL),void 0===e&&(e=i.DEFAULT_SESSION_ID),void 0===n&&(n=null),void 0===o&&(o=null),void 0===s&&(s=null),this.url=t,this.id=e,this.args_string=n,this._on_have_session_hook=o,this._on_closed_permanently_hook=s,this._number=h++,this.socket=null,this.session=null,this.closed_permanently=!1,this._current_handler=null,this._pending_ack=null,this._pending_replies={},this._receiver=new a.Receiver,r.logger.debug(\"Creating websocket \"+this._number+\" to '\"+this.url+\"' session '\"+this.id+\"'\")}return t.prototype.connect=function(){var t=this;if(this.closed_permanently)return n.Promise.reject(new Error(\"Cannot connect() a closed ClientConnection\"));if(null!=this.socket)return n.Promise.reject(new Error(\"Already connected\"));this._pending_replies={},this._current_handler=null;try{var e=this.url+\"?bokeh-protocol-version=1.0&bokeh-session-id=\"+this.id;return null!=this.args_string&&this.args_string.length>0&&(e+=\"&\"+this.args_string),this.socket=new WebSocket(e),new n.Promise(function(e,i){t.socket.binaryType=\"arraybuffer\",t.socket.onopen=function(){return t._on_open(e,i)},t.socket.onmessage=function(e){return t._on_message(e)},t.socket.onclose=function(e){return t._on_close(e)},t.socket.onerror=function(){return t._on_error(i)}})}catch(t){return r.logger.error(\"websocket creation failed to url: \"+this.url),r.logger.error(\" - \"+t),n.Promise.reject(t)}},t.prototype.close=function(){this.closed_permanently||(r.logger.debug(\"Permanently closing websocket connection \"+this._number),this.closed_permanently=!0,null!=this.socket&&this.socket.close(1e3,\"close method called on ClientConnection \"+this._number),this.session._connection_closed(),null!=this._on_closed_permanently_hook&&(this._on_closed_permanently_hook(),this._on_closed_permanently_hook=null))},t.prototype._schedule_reconnect=function(t){var e=this;setTimeout(function(){e.closed_permanently||r.logger.info(\"Websocket connection \"+e._number+\" disconnected, will not attempt to reconnect\");return},t)},t.prototype.send=function(t){if(null==this.socket)throw new Error(\"not connected so cannot send \"+t);t.send(this.socket)},t.prototype.send_with_reply=function(t){var e=this,i=new n.Promise(function(i,n){e._pending_replies[t.msgid()]=[i,n],e.send(t)});return i.then(function(t){if(\"ERROR\"===t.msgtype())throw new Error(\"Error reply \"+t.content.text);return t},function(t){throw t})},t.prototype._pull_doc_json=function(){var t=s.Message.create(\"PULL-DOC-REQ\",{}),e=this.send_with_reply(t);return e.then(function(t){if(!(\"doc\"in t.content))throw new Error(\"No 'doc' field in PULL-DOC-REPLY\");return t.content.doc},function(t){throw t})},t.prototype._repull_session_doc=function(){var t=this;null==this.session?r.logger.debug(\"Pulling session for first time\"):r.logger.debug(\"Repulling session\"),this._pull_doc_json().then(function(e){if(null==t.session)if(t.closed_permanently)r.logger.debug(\"Got new document after connection was already closed\");else{var i=o.Document.from_json(e),n=o.Document._compute_patch_since_json(e,i);if(n.events.length>0){r.logger.debug(\"Sending \"+n.events.length+\" changes from model construction back to server\");var a=s.Message.create(\"PATCH-DOC\",{},n);t.send(a)}t.session=new l.ClientSession(t,i,t.id),r.logger.debug(\"Created a new session from new pulled doc\"),null!=t._on_have_session_hook&&(t._on_have_session_hook(t.session),t._on_have_session_hook=null)}else t.session.document.replace_with_json(e),r.logger.debug(\"Updated existing session with new pulled doc\")},function(t){throw t}).catch(function(t){null!=console.trace&&console.trace(t),r.logger.error(\"Failed to repull session \"+t)})},t.prototype._on_open=function(t,e){var i=this;r.logger.info(\"Websocket connection \"+this._number+\" is now open\"),this._pending_ack=[t,e],this._current_handler=function(t){i._awaiting_ack_handler(t)}},t.prototype._on_message=function(t){null==this._current_handler&&r.logger.error(\"Got a message with no current handler set\");try{this._receiver.consume(t.data)}catch(t){this._close_bad_protocol(t.toString())}if(null!=this._receiver.message){var e=this._receiver.message,i=e.problem();null!=i&&this._close_bad_protocol(i),this._current_handler(e)}},t.prototype._on_close=function(t){var e=this;r.logger.info(\"Lost websocket \"+this._number+\" connection, \"+t.code+\" (\"+t.reason+\")\"),this.socket=null,null!=this._pending_ack&&(this._pending_ack[1](new Error(\"Lost websocket connection, \"+t.code+\" (\"+t.reason+\")\")),this._pending_ack=null);for(var i=function(){for(var t in e._pending_replies){var i=e._pending_replies[t];return delete e._pending_replies[t],i}return null},n=i();null!=n;)n[1](\"Disconnected\"),n=i();this.closed_permanently||this._schedule_reconnect(2e3)},t.prototype._on_error=function(t){r.logger.debug(\"Websocket error on socket \"+this._number),t(new Error(\"Could not open websocket\"))},t.prototype._close_bad_protocol=function(t){r.logger.error(\"Closing connection: \"+t),null!=this.socket&&this.socket.close(1002,t)},t.prototype._awaiting_ack_handler=function(t){var e=this;\"ACK\"===t.msgtype()?(this._current_handler=function(t){return e._steady_state_handler(t)},this._repull_session_doc(),null!=this._pending_ack&&(this._pending_ack[0](this),this._pending_ack=null)):this._close_bad_protocol(\"First message was not an ACK\")},t.prototype._steady_state_handler=function(t){if(t.reqid()in this._pending_replies){var e=this._pending_replies[t.reqid()];delete this._pending_replies[t.reqid()],e[0](t)}else this.session.handle(t)},t}();i.ClientConnection=c,i.pull_session=function(t,e,i){return new n.Promise(function(n,o){return new c(t,e,i,function(t){try{n(t)}catch(e){throw r.logger.error(\"Promise handler threw an error, closing session \"+e),t.close(),e}},function(){o(new Error(\"Connection was closed before we successfully pulled a session\"))}).connect().then(function(t){},function(t){throw r.logger.error(\"Failed to connect to Bokeh server \"+t),t})})}},function(t,e,i){var n=t(14),r=t(50),o=t(262),s=function(){function t(t,e,i){var n=this;this._connection=t,this.document=e,this.id=i,this._document_listener=function(t){return n._document_changed(t)},this.document.on_change(this._document_listener),this.event_manager=this.document.event_manager,this.event_manager.session=this}return t.prototype.handle=function(t){var e=t.msgtype();\"PATCH-DOC\"===e?this._handle_patch(t):\"OK\"===e?this._handle_ok(t):\"ERROR\"===e?this._handle_error(t):n.logger.debug(\"Doing nothing with message \"+t.msgtype())},t.prototype.close=function(){this._connection.close()},t.prototype.send_event=function(t){var e=o.Message.create(\"EVENT\",{},JSON.stringify(t));this._connection.send(e)},t.prototype._connection_closed=function(){this.document.remove_on_change(this._document_listener)},t.prototype.request_server_info=function(){var t=o.Message.create(\"SERVER-INFO-REQ\",{}),e=this._connection.send_with_reply(t);return e.then(function(t){return t.content})},t.prototype.force_roundtrip=function(){return this.request_server_info().then(function(t){})},t.prototype._document_changed=function(t){if(t.setter_id!==this.id&&(!(t instanceof r.ModelChangedEvent)||t.attr in t.model.serializable_attributes())){var e=o.Message.create(\"PATCH-DOC\",{},this.document.create_json_patch([t]));this._connection.send(e)}},t.prototype._handle_patch=function(t){this.document.apply_json_patch(t.content,t.buffers,this.id)},t.prototype._handle_ok=function(t){n.logger.trace(\"Unhandled OK reply to \"+t.reqid())},t.prototype._handle_error=function(t){n.logger.error(\"Unhandled ERROR reply to \"+t.reqid()+\": \"+t.content.text)},t}();i.ClientSession=s},function(t,e,i){function n(t){return function(e){e.prototype.event_name=t,a[t]=e}}var r=t(380),o=t(14),s=t(32),a={};i.register_event_class=n,i.register_with_event=function(t){for(var e=[],i=1;i