From df59d5a0995d4527a190c6f43b59465f61f04787 Mon Sep 17 00:00:00 2001 From: jrobinso <933148+jrobinso@users.noreply.github.com> Date: Sun, 1 Oct 2023 23:40:41 -0700 Subject: [PATCH] ditto --- .../java/org/broad/igv/feature/genome/TwoBitSequence.java | 4 ---- src/test/java/org/broad/igv/feature/genome/GenomeTest.java | 4 ---- .../java/org/broad/igv/feature/genome/TwoBitReaderTest.java | 6 +----- 3 files changed, 1 insertion(+), 13 deletions(-) diff --git a/src/main/java/org/broad/igv/feature/genome/TwoBitSequence.java b/src/main/java/org/broad/igv/feature/genome/TwoBitSequence.java index 653ea0f82b..dd5358793a 100644 --- a/src/main/java/org/broad/igv/feature/genome/TwoBitSequence.java +++ b/src/main/java/org/broad/igv/feature/genome/TwoBitSequence.java @@ -31,8 +31,4 @@ public int getChromosomeLength(String chrname) { throw new RuntimeException("getBase is not implementd for TwoBitSequence"); } - @Override - public boolean isRemote() { - return false; - } } diff --git a/src/test/java/org/broad/igv/feature/genome/GenomeTest.java b/src/test/java/org/broad/igv/feature/genome/GenomeTest.java index 668267cdee..74bfff69c3 100644 --- a/src/test/java/org/broad/igv/feature/genome/GenomeTest.java +++ b/src/test/java/org/broad/igv/feature/genome/GenomeTest.java @@ -186,10 +186,6 @@ public int getChromosomeLength(String chrname) { return index.getSequenceSize(chrname); } - @Override - public boolean isRemote() { - return false; - } } public static void generateJunkIndex() throws Exception { diff --git a/src/test/java/org/broad/igv/feature/genome/TwoBitReaderTest.java b/src/test/java/org/broad/igv/feature/genome/TwoBitReaderTest.java index 80294f63ad..711b8a8023 100644 --- a/src/test/java/org/broad/igv/feature/genome/TwoBitReaderTest.java +++ b/src/test/java/org/broad/igv/feature/genome/TwoBitReaderTest.java @@ -50,11 +50,7 @@ public void readSequenceRemote() throws IOException { seqbytes = reader.readSequence("chr1", 120565294, 120565335); seq = new String(seqbytes); assertEquals(expectedSeq, seq); - - // Unrecongized sequence name - expectedSeq = null; - seqbytes = reader.readSequence("noSuchSequence", 0, 10); - assertEquals(expectedSeq, seqbytes); + } } \ No newline at end of file