- Measles Case Fatality Rate in Bihar, India, 2011–12
- Measles deaths in Nepal: estimating the national case–fatality ratio
- Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome
- Mining Internet search and social media for epidemiology
- WHO COVID-19 App
- Coronavirus (COVID-19)
- Federal Emergency Management Agency (FEMA)
- NIH Covid-19 Research
- NIH Public Health Emergency and Disaster Research Response (DR2)
- NCATS National COVID Cohort Collaborative
- Covid-19 OpenData Browser
- Reactome Pathway Graph Database
- Awesome Coronavirus
- Awesome Novel Covid
- India 2011 Census Data
- MedicineNet Diseases A-Z
- Disease Prediction from Symptoms
- Disease Ontology
- Human disease network based on GWAS loci
- Disease Info
- Awesome Healthmetrics
- Awesome Mental Health
- List of Diseases
- COVID-19 Hospital Impact Model for Epidemics
- Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States
- Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time
- Agent-based simulation model for COVID-19 spread in society and patient outcomes
- CovsirPhy: Python package for COVID-19 analysis with phase-dependent SIR-derived ODE models
- Code base for the epidemiological model introduced in the context of COVID-19
- The effect of human mobility and control measures on the COVID-19 epidemic in China
- COVID-19 social distancing simulator
- Covid Epidemics Simulation with Simpy
- An R package with over 40 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
- Unpivoted and cleaned data sets on the COVID-19 pandemic
- Unified COVID-19 Dataset
- Daily time-series epidemiology and hospitalization data for all countries
- Track the COVID-19 (2019 novel Coronavirus) statistics in the command line
- R Package for Analyzing John Snow's 1854 Cholera Map
- Public repository hosting datasets and analysis done for our paper on Venice plague epidemic
- Influenza forecasts visualizer
- Using digital epidemiology methods to monitor influenza-like illness in the Netherland
- A simulator of malaria epidemiology and control
- Algorithms for TB molecular epidemiology analysis
- Zika Epidemiology - Case Numbers
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
- Current development version of EvoNetHIV package
- R script for calculating cox proportional hazard models for the association between polyphenols and cancer risk
- Cancer epidemiology for Arizona
- Dashboard to represent Cancer Epidemiology data
- Models of SEIRS epidemic dynamics with extensions
- Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool
- Message-Passing framework for SIR epidemic spreading on temporal networks
- Simulation of a SIR Epidemic process on the Gnutella p2p network on Python
- Programs to exactly calculate the importance of sets of nodes for three aspects of importance in SIR network
- A Mesa-based ABM library for epidemiological (SIR) modeling
- Simulators for Compartmental Models in Epidemiology
- An agent-based epidemiology simulation framework built in Rust
- An attempt at modelling the spread of measles in secondary schools using an ABM method
- June is a framework for agent based modelling in an epidemiological and geographical context
- Code for our Trends in Opioid Mortality paper in Epidemiology
- A tool for analysing continuous glucose monitoring (CGM) data in epidemiology
- Conduct Analyses in "Evaluating the Impact of Long-term Exposure to Fine Particulate Matter
- A Generic Model to Simulate Air-Borne Diseases as a Function of Crop Architecture
- Simulating virus evolution and epidemiology
- R package to simplify the analysis and prediction of Antimicrobial Resistance
- R Scripts and supporting data for creating metamodels, as published in Ecosphere
- PCP for environmental health / epidemiology
- Environmental epidemiology simulations
- Julia package for ecosystem simulation
- Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
- Build petri net models compositionally
- mGEMS Genomic epidemiology with mixed samples
- Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology
- Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological
- Primer schemes for real-time genome epidemiology
- Visualize Hi-C data alongside annotation relevant to genetic epidemiology studies
- Scripts and methods for fast bacterial genomic epidemiology
- Temporal horizons of genomic epidemiology
- Red Cross: Community-Based Surveillance
- Report templates and helper functions for field epidemiologists
- EpiTator annotates epidemiological information in text documents
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al
- R parser for NCI Surveillance, Epidemiology, and End Results (SEER) text data
- Incidence Estimation Tools
- Computer-assisted telephone interviewing (CATI) for large epidemiology studies
- Computer-assisted personal interviewing (CAPI) for large epidemiology studies
- Participant relationship management (PRM) software for large epidemiology studies
- Package for medical bibliographic data
- Epidemiological weeks based on the CDC (MMWR) and ISO week numbering systems
- Rmd files for the Epidemiology and Ecology in R Exercises for the Plant Health Instructor
- Quickly make tables of descriptive statistics
- A collection of htmlwidgets handy for epidemiology
- WebUI for the Reveal epidemiological surveillance platform
- Visualization tool to help make multi-model seasonal influenza forecasts more actionable for decision
- Visualizing disease spread using p5js
- Epidemic Modeling for Everyone
- Mathematical Modeling of Infectious Disease Dynamics
- Python tools for epidemiology
- Julia and Python complex system applications in ecology, epidemiology
- Tutorial in Python targeted at Epidemiologists
- Epidemiology analysis package
- Source files for building the IDM EMOD disease transmission model
- Split Kmer Analysis
- An Integrative Metaregression Framework for Descriptive Epidemiology
- Domain-Specific Modeling for Epidemiology
- Source code for the EpiEstim app
- A framework for data-driven stochastic disease spread simulations
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic
- Molecular Epidemiology of Viruses in R
- R Package of methods and data for spatial epidemiology
- Global.health: a data science initiative to enable rapid sharing of trusted and open public health data
- A versatile software for modeling epidemics on networks
- Dynamical Systems Approach to Infectious Disease Epidemiology
- Infectious disease model library and utilities
- A Bayesian spatio-temporal interaction model for epidemiology
- missing data handing: visualize and impute
- Small Helpers and Tricks for Epidemics Analysis
- Predicting treatment effects from RCTs
- R package for epigraphdb
- Stochastic epidemiological branching simulation
- Liberate Google Takeout location data for epidemiological research and local contact tracing
- a python driver for epidemic modeling and inference
- Epidemiological surveillance in Python
- Code and data for final epidemic size calculations
- R parse the Surveillance, Epidemiology, and End Results (SEER) Program data from NIH/NCI
- epiR — Tools for the Analysis of Epidemiological Data
- Bayesian Spatial Analysis
- Library for simulation with mathematical epidemiology models
- Basic sensitivity analysis of epidemiological results in R
- The Visualization Multitool for Molecular Epidemiology and Bioinformatics
- Causal Inference in Epidemiology
- SORMAS-Stats contains functions to analyze and visualize surveillance data collected by SORMAS
- A tool for modeling and simulation of surveillance and control in epidemiology
- Population Attributable Risk estimation
- Crawling Israel's Ministry of Health's epidemiological weekly reports
- Epidemiological simulations
- An R package for epidemiological analysis using population data
- A suite of packages to implement the MASH project
- R functions based on episheet and the text book Modern Epidemiology
- Functions for the MSc HDA&ML Translational Data Sciences and Computational Epidemiology projects
- Simulation scripts for matching weights in three-group studies (Epidemiology 2017)
- R package with social contact data for 152 countries
- Practical R for Epidemiologists
- End-to-end pipeline for simulating behavior change, mitigation on economics, psychology, and mortality
- Dockerized tools for the Center for Omics Discovery and Epidemiology
- Epidemiological surveillance plateform
- A model of a spreading epidemic
- Multi-stage hierarchical estimation of disease processes on demographic observations
- Generation of a venomous snake vulnerability surface
- Some educaitonal material about basic epidemiology models
- Tools for estimating epidemiological quantities from social media
- Epidemiological modelling
- GVSU Computational Epidemiology Research
- Logistic curves applied to epidemiology
- Epidemiology Compartmental Modeling Monad in R
- Log-Gaussian Cox Processes applied to Epidemiology
- Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases
- JSONP
- Epidemiology Courses
- Public Health 101 Series
- Principles of Epidemiology in Public Health Practice
- Epidemiology and Surveillance, Manitoba
- Epidemiology Chapter 20
- Environmental Hazards and Human Health
- Epidemiology, A public health science
- Material for advanced epidemiology module in MPH
- Whole genomes practical for the SSCM Genetic Epidemiology Short Course
- Book on Dynamical Systems Approaches to Infectious Disease Epidemiology
- Material for the course Statistical Practice in Epidemiology with R
- Spatial Epidemiology Lab
- LSHTM's Statistics for Epidemiology and Population Health course
- 2018 Genomic Epidemiology Workshop at Academia Sinica
- Molecular Epidemiology of Viruses in R