From 3288007fd3a3522390abeb584edbf6d4e11d3691 Mon Sep 17 00:00:00 2001
From: Joshua Bronson <jabronson@gmail.com>
Date: Sat, 5 Oct 2024 09:34:33 -0400
Subject: [PATCH] switch to uv lockfile + associated cleanup

---
 .github/workflows/benchmark.yml               |   5 +-
 .github/workflows/test.yml                    |  12 +-
 .github/workflows/update_dev_deps.yml         |   2 +-
 .pre-commit-config.yaml                       |   2 +-
 dev-deps/dev.env                              |   8 -
 dev-deps/dev.in                               |   5 -
 dev-deps/dev.txt                              |  68 --
 dev-deps/docs.in                              |   3 -
 dev-deps/docs.txt                             |  62 --
 dev-deps/test.in                              |  11 -
 dev-deps/test.txt                             |  51 -
 flake.nix                                     |  14 +-
 init_dev_env                                  |  13 +-
 pyproject.toml                                |  27 +
 tox.ini                                       |  40 +-
 ...ev_dependencies => update_dev_dependencies |  16 +-
 uv.lock                                       | 962 ++++++++++++++++++
 17 files changed, 1030 insertions(+), 271 deletions(-)
 delete mode 100644 dev-deps/dev.env
 delete mode 100644 dev-deps/dev.in
 delete mode 100644 dev-deps/dev.txt
 delete mode 100644 dev-deps/docs.in
 delete mode 100644 dev-deps/docs.txt
 delete mode 100644 dev-deps/test.in
 delete mode 100644 dev-deps/test.txt
 rename dev-deps/update_dev_dependencies => update_dev_dependencies (64%)
 create mode 100644 uv.lock

diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml
index be24d5e9..2eb802f5 100644
--- a/.github/workflows/benchmark.yml
+++ b/.github/workflows/benchmark.yml
@@ -42,14 +42,13 @@ jobs:
         uses: hynek/setup-cached-uv@4b4bfa932036976749a9653b0fa4fa10b1a7092b
       - name: create and activate virtualenv
         run: |
-          uv venv
+          uv sync --extra=test
           source .venv/bin/activate
           echo PATH="$PATH" >> "$GITHUB_ENV"
-      - name: uv pip install
-        run: uv pip install -r dev-deps/test.txt
       - name: install the version of bidict to benchmark
         run: |
           git checkout ${{ github.event.inputs.ref || github.sha }}
+          # install a non-editable version of bidict at the revision under test
           uv pip install --no-deps .
           # restore the current revision so we use its version of tests/microbenchmarks.py
           git checkout ${{ github.sha }}
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 664f2574..a1f2b39c 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -40,9 +40,6 @@ jobs:
           - pyversion: "3.10"
           - pyversion: "3.9"
           - pyversion: "pypy-3.10"
-            deps_subdir: "pypy3.10"
-          - pyversion: "pypy-3.9"
-            deps_subdir: "pypy3.9"
     steps:
       - name: check out source
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
@@ -54,11 +51,9 @@ jobs:
         uses: hynek/setup-cached-uv@4b4bfa932036976749a9653b0fa4fa10b1a7092b
       - name: create and activate virtualenv
         run: |
-          uv venv
+          uv sync --extra=test
           source .venv/bin/activate
           echo PATH="$PATH" >> "$GITHUB_ENV"
-      - name: uv pip install
-        run: uv pip install -r dev-deps/test.txt
       - name: cache .mypy_cache dir
         uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9
         with:
@@ -78,12 +73,9 @@ jobs:
       - name: maybe enable coverage
         if: matrix.enable_coverage
         run: |
+          echo COVERAGE_CORE=sysmon >> "$GITHUB_ENV"
           echo COVERAGE_PROCESS_START="$(pwd)/.coveragerc" >> "$GITHUB_ENV"
           echo RUN_PYTEST_CMD="coverage run -m pytest" >> "$GITHUB_ENV"
-      - name: set COVERAGE_CORE=sysmon if py3.12
-        if: matrix.pyversion == '3.12'
-        run: |
-          echo COVERAGE_CORE=sysmon >> "$GITHUB_ENV"
       - name: run pytest
         run: ${RUN_PYTEST_CMD:-pytest}
       - name: combine and show any collected coverage
diff --git a/.github/workflows/update_dev_deps.yml b/.github/workflows/update_dev_deps.yml
index 91c5515a..ad83b27b 100644
--- a/.github/workflows/update_dev_deps.yml
+++ b/.github/workflows/update_dev_deps.yml
@@ -17,7 +17,7 @@ jobs:
       # - name: set up upterm session
       #   uses: lhotari/action-upterm@v1
       - name: update development dependencies
-        run: nix develop --command bash -c './init_dev_env && ./dev-deps/update_dev_dependencies'
+        run: nix develop --command bash -c './update_dev_dependencies'
       - name: create PR
         uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c
         with:
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ae652ead..62d7e802 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -50,7 +50,7 @@ repos:
           - pytest
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.8
+    rev: v0.6.9
     hooks:
       - id: ruff
         args: [--fix, --unsafe-fixes]
diff --git a/dev-deps/dev.env b/dev-deps/dev.env
deleted file mode 100644
index 5011005f..00000000
--- a/dev-deps/dev.env
+++ /dev/null
@@ -1,8 +0,0 @@
-# Keep in sync with _default_py_minor_ver in /tox.ini:
-export DEFAULT_PY_MINOR_VER="12"
-export DEFAULT_PY_VER="3.$DEFAULT_PY_MINOR_VER"
-export DEFAULT_PY="python$DEFAULT_PY_VER"
-export BIDICT_ROOT_DIR="$(git rev-parse --show-toplevel)"
-export VENV_SUBDIR=".venv"
-export VENV_DIR="$BIDICT_ROOT_DIR/$VENV_SUBDIR"
-export UV_PYTHON="$VENV_DIR/bin/python"
diff --git a/dev-deps/dev.in b/dev-deps/dev.in
deleted file mode 100644
index b4c4c767..00000000
--- a/dev-deps/dev.in
+++ /dev/null
@@ -1,5 +0,0 @@
-pytest-clarity
-pytest-icdiff
-tox
-tox-uv
-uv
diff --git a/dev-deps/dev.txt b/dev-deps/dev.txt
deleted file mode 100644
index e5cd12d3..00000000
--- a/dev-deps/dev.txt
+++ /dev/null
@@ -1,68 +0,0 @@
-# This file was autogenerated by uv via the following command:
-#    uv pip compile --universal dev-deps/dev.in -o dev-deps/dev.txt
-cachetools==5.5.0
-    # via tox
-chardet==5.2.0
-    # via tox
-colorama==0.4.6
-    # via
-    #   pytest
-    #   tox
-distlib==0.3.8
-    # via virtualenv
-filelock==3.16.1
-    # via
-    #   tox
-    #   virtualenv
-icdiff==2.0.7
-    # via pytest-icdiff
-iniconfig==2.0.0
-    # via pytest
-markdown-it-py==3.0.0
-    # via rich
-mdurl==0.1.2
-    # via markdown-it-py
-packaging==24.1
-    # via
-    #   pyproject-api
-    #   pytest
-    #   tox
-    #   tox-uv
-platformdirs==4.3.6
-    # via
-    #   tox
-    #   virtualenv
-pluggy==1.5.0
-    # via
-    #   pytest
-    #   tox
-pprintpp==0.4.0
-    # via
-    #   pytest-clarity
-    #   pytest-icdiff
-pygments==2.18.0
-    # via rich
-pyproject-api==1.8.0
-    # via tox
-pytest==8.3.3
-    # via
-    #   pytest-clarity
-    #   pytest-icdiff
-pytest-clarity==1.0.1
-    # via -r dev-deps/dev.in
-pytest-icdiff==0.9
-    # via -r dev-deps/dev.in
-rich==13.8.1
-    # via pytest-clarity
-tox==4.21.0
-    # via
-    #   -r dev-deps/dev.in
-    #   tox-uv
-tox-uv==1.13.0
-    # via -r dev-deps/dev.in
-uv==0.4.17
-    # via
-    #   -r dev-deps/dev.in
-    #   tox-uv
-virtualenv==20.26.6
-    # via tox
diff --git a/dev-deps/docs.in b/dev-deps/docs.in
deleted file mode 100644
index a68cc01e..00000000
--- a/dev-deps/docs.in
+++ /dev/null
@@ -1,3 +0,0 @@
-sphinx
-sphinx-copybutton
-furo
diff --git a/dev-deps/docs.txt b/dev-deps/docs.txt
deleted file mode 100644
index a031a1eb..00000000
--- a/dev-deps/docs.txt
+++ /dev/null
@@ -1,62 +0,0 @@
-# This file was autogenerated by uv via the following command:
-#    uv pip compile --universal dev-deps/docs.in -o dev-deps/docs.txt
-alabaster==1.0.0
-    # via sphinx
-babel==2.16.0
-    # via sphinx
-beautifulsoup4==4.12.3
-    # via furo
-certifi==2024.8.30
-    # via requests
-charset-normalizer==3.3.2
-    # via requests
-colorama==0.4.6 ; sys_platform == 'win32'
-    # via sphinx
-docutils==0.21.2
-    # via sphinx
-furo==2024.8.6
-    # via -r dev-deps/docs.in
-idna==3.10
-    # via requests
-imagesize==1.4.1
-    # via sphinx
-jinja2==3.1.4
-    # via sphinx
-markupsafe==2.1.5
-    # via jinja2
-packaging==24.1
-    # via sphinx
-pygments==2.18.0
-    # via
-    #   furo
-    #   sphinx
-requests==2.32.3
-    # via sphinx
-snowballstemmer==2.2.0
-    # via sphinx
-soupsieve==2.6
-    # via beautifulsoup4
-sphinx==8.0.2
-    # via
-    #   -r dev-deps/docs.in
-    #   furo
-    #   sphinx-basic-ng
-    #   sphinx-copybutton
-sphinx-basic-ng==1.0.0b2
-    # via furo
-sphinx-copybutton==0.5.2
-    # via -r dev-deps/docs.in
-sphinxcontrib-applehelp==2.0.0
-    # via sphinx
-sphinxcontrib-devhelp==2.0.0
-    # via sphinx
-sphinxcontrib-htmlhelp==2.1.0
-    # via sphinx
-sphinxcontrib-jsmath==1.0.1
-    # via sphinx
-sphinxcontrib-qthelp==2.0.0
-    # via sphinx
-sphinxcontrib-serializinghtml==2.0.0
-    # via sphinx
-urllib3==2.2.3
-    # via requests
diff --git a/dev-deps/test.in b/dev-deps/test.in
deleted file mode 100644
index 74782555..00000000
--- a/dev-deps/test.in
+++ /dev/null
@@ -1,11 +0,0 @@
-coverage
-coverage-enable-subprocess
-hypothesis
-mypy
-pytest
-pytest-benchmark
-pytest-sphinx
-pytest-xdist
-sortedcollections
-sortedcontainers
-typing_extensions
diff --git a/dev-deps/test.txt b/dev-deps/test.txt
deleted file mode 100644
index ec9d3c48..00000000
--- a/dev-deps/test.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-# This file was autogenerated by uv via the following command:
-#    uv pip compile --universal dev-deps/test.in -o dev-deps/test.txt
-attrs==24.2.0
-    # via hypothesis
-colorama==0.4.6 ; sys_platform == 'win32'
-    # via pytest
-coverage==7.6.1
-    # via
-    #   -r dev-deps/test.in
-    #   coverage-enable-subprocess
-coverage-enable-subprocess==1.0
-    # via -r dev-deps/test.in
-execnet==2.1.1
-    # via pytest-xdist
-hypothesis==6.112.2
-    # via -r dev-deps/test.in
-iniconfig==2.0.0
-    # via pytest
-mypy==1.11.2
-    # via -r dev-deps/test.in
-mypy-extensions==1.0.0
-    # via mypy
-packaging==24.1
-    # via pytest
-pluggy==1.5.0
-    # via pytest
-py-cpuinfo==9.0.0
-    # via pytest-benchmark
-pytest==8.3.3
-    # via
-    #   -r dev-deps/test.in
-    #   pytest-benchmark
-    #   pytest-sphinx
-    #   pytest-xdist
-pytest-benchmark==4.0.0
-    # via -r dev-deps/test.in
-pytest-sphinx==0.6.3
-    # via -r dev-deps/test.in
-pytest-xdist==3.6.1
-    # via -r dev-deps/test.in
-sortedcollections==2.1.0
-    # via -r dev-deps/test.in
-sortedcontainers==2.4.0
-    # via
-    #   -r dev-deps/test.in
-    #   hypothesis
-    #   sortedcollections
-typing-extensions==4.12.2
-    # via
-    #   -r dev-deps/test.in
-    #   mypy
diff --git a/flake.nix b/flake.nix
index 8034476d..4f2cacb4 100644
--- a/flake.nix
+++ b/flake.nix
@@ -21,18 +21,12 @@
           python39
           pypy310
           pypy39
-          uv  # bootstrap uv version
+          uv  # bootstrap uv version (another version is installed in the dev env by this version)
         ];
         shellHook = ''
-          source ./dev-deps/dev.env
-          if test -e "$VENV_SUBDIR"; then
-            echo "* Using pre-existing development virtualenv dir ($VENV_SUBDIR)"
-          else
-            echo "* No pre-existing development virtualenv dir ($VENV_SUBDIR), initializing..."
-            ./init_dev_env
-          fi
-          source "$VENV_SUBDIR/bin/activate"
-          echo "* Activated development virtualenv ($VENV_SUBDIR)"
+          ./init_dev_env
+          source ".venv/bin/activate"
+          echo "* Activated development virtualenv"
         '';
       };
     });
diff --git a/init_dev_env b/init_dev_env
index 26b2deeb..94018cd0 100755
--- a/init_dev_env
+++ b/init_dev_env
@@ -12,9 +12,7 @@ set -euo pipefail
 
 declare -r hint="Hint: Use 'nix develop' to bootstrap a development environment"
 
-source "$BIDICT_ROOT_DIR/dev-deps/dev.env"
-
-for cmd in uv pre-commit "$DEFAULT_PY"; do
+for cmd in uv pre-commit; do
   if ! type "$cmd"; then
     >&2 echo "Error: No '$cmd' on PATH. $hint"
     exit 1
@@ -22,9 +20,6 @@ for cmd in uv pre-commit "$DEFAULT_PY"; do
 done
 pre-commit install -f
 
-test -d "$VENV_DIR" || uv venv --python="$DEFAULT_PY" "$VENV_DIR"
-uv pip sync dev-deps/*.txt
-uv pip show -q bidict || uv pip install -e "$BIDICT_ROOT_DIR"
-
-echo "Development virtualenv initialized: $VENV_DIR"
-echo "To activate, run: source $VENV_DIR/bin/activate (or equivalent for your shell)"
+uv sync --all-extras
+echo "Development virtualenv initialized"
+echo "To activate, run: source .venv/bin/activate (or equivalent for your shell)"
diff --git a/pyproject.toml b/pyproject.toml
index d3e47aba..2b14d593 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -31,6 +31,33 @@ Documentation = "https://bidict.readthedocs.io"
 Sponsor = "https://bidict.readthedocs.io/#sponsoring"
 Repository = "https://github.com/jab/bidict"
 
+[project.optional-dependencies]
+test = [
+  "coverage",
+  "coverage-enable-subprocess",
+  "hypothesis",
+  "mypy",
+  "pytest",
+  "pytest-benchmark",
+  "pytest-sphinx",
+  "pytest-xdist",
+  "sortedcollections",
+  "sortedcontainers",
+  "typing_extensions",
+]
+dev = [
+  "pytest-clarity",
+  "pytest-icdiff",
+  "tox",
+  "tox-uv",
+  "uv",
+]
+docs = [
+  "sphinx",
+  "sphinx-copybutton",
+  "furo",
+]
+
 [build-system]
 requires = ["setuptools >= 40.9.0"]
 build-backend = "setuptools.build_meta"
diff --git a/tox.ini b/tox.ini
index 495a3a2c..80dab1be 100644
--- a/tox.ini
+++ b/tox.ini
@@ -1,20 +1,22 @@
 [tox]
 download = true
 envlist =
-  py3{12,11,10,9,8}
-  pypy3.{10,9}
-  benchmark
-  lint
-  docs
-  # do not include 'coverage' so it only runs when explicitly requested
+  py3{13,12,11,10,9}
+  pypy3.10
+  # Do not include the following so they only run when explicitly requested:
+  # benchmark
+  # coverage
+  # docs
+  # lint
 
 skip_missing_interpreters = true
-
-[testenv]
-deps = -r dev-deps/test.txt
 # https://hynek.me/articles/turbo-charge-tox/
 package = wheel
 wheel_build_env = .pkg
+
+[testenv]
+runner = uv-venv-lock-runner
+extras = test
 passenv =
   # https://docs.pytest.org/en/stable/example/simple.html
   PYTEST_ADDOPTS
@@ -30,16 +32,6 @@ commands =
 [testenv:benchmark]
 commands = pytest -n0 --benchmark-autosave tests/microbenchmarks.py
 
-[testenv:lint]
-deps =
-skip_install = true
-allowlist_externals = pre-commit
-commands = pre-commit run --all-files --verbose --show-diff-on-failure
-
-[testenv:docs]
-deps = -r dev-deps/docs.txt
-commands = sphinx-build -Wn --keep-going -b html -d {envtmpdir}/doctrees docs {envtmpdir}/html
-
 [testenv:coverage]
 setenv =
   # https://coverage.readthedocs.io/en/7.4.0/changes.html#version-7-4-0-2023-12-27
@@ -50,3 +42,13 @@ commands =
   coverage run -m pytest
   coverage combine
   coverage report
+
+[testenv:docs]
+extras = docs
+commands = sphinx-build -Wn --keep-going -b html -d {envtmpdir}/doctrees docs {envtmpdir}/html
+
+[testenv:lint]
+deps =
+skip_install = true
+allowlist_externals = pre-commit
+commands = pre-commit run --all-files --verbose --show-diff-on-failure
diff --git a/dev-deps/update_dev_dependencies b/update_dev_dependencies
similarity index 64%
rename from dev-deps/update_dev_dependencies
rename to update_dev_dependencies
index 90c01eb9..e21d9c6a 100755
--- a/dev-deps/update_dev_dependencies
+++ b/update_dev_dependencies
@@ -17,21 +17,17 @@ log() {
 
 
 main() {
-  local -r dotslash="$(dirname "$(readlink -f "$0")")"
-  source "$dotslash/dev.env"
-  for cmd in "$DEFAULT_PY" uv pre-commit; do
+  declare -r hint="Hint: Use 'nix develop' to bootstrap a development environment"
+
+  for cmd in uv pre-commit; do
     if ! type "$cmd"; then
-      log "Error: No '$cmd' on PATH. Hint: Check /init_dev_env and try again."
+      log "Error: No '$cmd' on PATH. $hint"
       exit 1
     fi
   done
 
-  local -r pip_compile="uv pip compile --upgrade --universal"
-  for depset in test docs dev; do
-    $pip_compile "dev-deps/$depset.in" -o "dev-deps/$depset.txt" >/dev/null
-  done
-  uv pip sync dev-deps/*.txt
-  uv pip show -q bidict || uv pip install -e "$BIDICT_ROOT_DIR"
+  log "Upgrading PyPI dependencies..."
+  uv lock --upgrade
   log "Upgrading PyPI dependencies: Done"
   log
   log "Upgrading pre-commit hooks..."
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 00000000..31b8b5d8
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,962 @@
+version = 1
+requires-python = ">=3.9"
+
+[[package]]
+name = "alabaster"
+version = "0.7.16"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/c9/3e/13dd8e5ed9094e734ac430b5d0eb4f2bb001708a8b7856cbf8e084e001ba/alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65", size = 23776 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/32/34/d4e1c02d3bee589efb5dfa17f88ea08bdb3e3eac12bc475462aec52ed223/alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92", size = 13511 },
+]
+
+[[package]]
+name = "attrs"
+version = "24.2.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/fc/0f/aafca9af9315aee06a89ffde799a10a582fe8de76c563ee80bbcdc08b3fb/attrs-24.2.0.tar.gz", hash = "sha256:5cfb1b9148b5b086569baec03f20d7b6bf3bcacc9a42bebf87ffaaca362f6346", size = 792678 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/6a/21/5b6702a7f963e95456c0de2d495f67bf5fd62840ac655dc451586d23d39a/attrs-24.2.0-py3-none-any.whl", hash = "sha256:81921eb96de3191c8258c199618104dd27ac608d9366f5e35d011eae1867ede2", size = 63001 },
+]
+
+[[package]]
+name = "babel"
+version = "2.16.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/2a/74/f1bc80f23eeba13393b7222b11d95ca3af2c1e28edca18af487137eefed9/babel-2.16.0.tar.gz", hash = "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316", size = 9348104 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ed/20/bc79bc575ba2e2a7f70e8a1155618bb1301eaa5132a8271373a6903f73f8/babel-2.16.0-py3-none-any.whl", hash = "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b", size = 9587599 },
+]
+
+[[package]]
+name = "beautifulsoup4"
+version = "4.12.3"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
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