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resources.bib
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%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/
%% Created for Will Landau at 2012-10-07 04:51:52 -0500
%% Saved with string encoding Unicode (UTF-8)
@comment{jabref-meta: selector_publisher:}
@comment{jabref-meta: selector_author:}
@comment{jabref-meta: selector_journal:}
@comment{jabref-meta: selector_keywords:}
%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/
%% Created for Will Landau at 2012-10-07 14:36:57 -0500
%% Saved with string encoding Unicode (UTF-8)
@article{abcsysbiopaper,
Author = {Liepe, J. and Barnes, C. and Cule, E. and Erguler, K. and Kirk, P. and Toni, T. and Stumpf, M.},
Date-Added = {2012-10-07 19:12:24 +0000},
Date-Modified = {2012-10-07 19:15:29 +0000},
Howpublished = {\url{http://bioinformatics.oxfordjournals.org/content/26/14/1797.full?keytype=ref\&ijkey=AVSfAhR7XFxjrMj}},
Journal = {Bioinformatics},
Month = {May},
Number = {14},
Pages = {1797-1799},
Title = {ABC-SysBio-approximate Bayesian computation in Python with GPU support},
Volume = {26},
Year = {2010}}
@misc{abcsysbio,
Author = {Barnes, C. and Liepe, J. and Cule, E. and Filippi, S. and Rolando, D. and McMahon, S. and Lisowska, B. and Kirk, P. and Erguler, K. and Toni, T. and Stumpf, M.},
Date-Added = {2012-10-07 19:10:19 +0000},
Date-Modified = {2012-10-07 19:12:23 +0000},
Howpublished = {\url{http://www.theosysbio.bio.ic.ac.uk/resources/abc-sysbio}},
Title = {ABC-SysBio: A tool for parameter inference and model selection},
Year = {2011}}
@misc{pycudadoc,
Author = {Klockner A.},
Date-Added = {2012-10-07 15:10:30 +0000},
Date-Modified = {2012-10-07 16:07:10 +0000},
Howpublished = {\url{http://documen.tician.de/pycuda/index.html}},
Month = {June},
Title = {PyCUDA 2012.1 Documentation},
Year = {2012}}
@misc{pycudaex,
Author = {Klockner A.},
Date-Added = {2012-10-07 15:10:22 +0000},
Date-Modified = {2012-10-07 16:48:36 +0000},
Howpublished = {\url{http://wiki.tiker.net/PyCuda/Examples}},
Month = {May},
Title = {Examples of PyCUDA Usage},
Year = {2012}}
@book{beazley,
Author = {Beazley, David M.},
Edition = {4},
Owner = {Landau},
Publisher = {Addison-Wesley},
Timestamp = {2012.10.01},
Title = {Python Essential Reference},
Year = {2009}}
@misc{webinar,
Author = {Bell, N. and Hoberock, J.},
Date-Added = {2012-10-07 09:51:23 +0000},
Date-Modified = {2012-10-07 09:51:47 +0000},
Howpublished = {\url{http://developer.download.nvidia.com/CUDA/training/webinarthrust1.mp4}},
Title = {Thrust}}
@misc{gputools,
Author = {Buckner, J. and Seligman, M. and Wilson, J.},
Title = {R+GPU},
Howpublished = {\url{http://brainarray.mbni.med.umich.edu/Brainarray/Rgpgpu/}}}
@misc{lib,
Howpublished = {\url{http://developer.nvidia.com/cuda/gpu-accelerated-libraries}},
Title = {GPU-Accelerated Libraries}
}
@misc{sdk,
Title = {GPU Computing SDK},
Howpublished = {\url{http://developer.nvidia.com/gpu-computing-sdk}}
}
@misc{matplotlib,
Author = {Hunter, J. and Dane, D. and Droettboom, M.},
Title = {matplotlib},
Howpublished = {\url{http://matplotlib.org/}}
}
@misc{pointers,
Author = {Jensen, T.},
Title = {A Tutorial on Pointers and Arrays in C},
Howpublished = {\url{http://pw1.netcom.com/~tjensen/ptr/pointers.htm}}}
@book{kernighan,
Author = {Kernighan, Brian W. and Ritchie, Dennis M.},
Edition = {2},
Owner = {Landau},
Publisher = {Prentice Hal},
Timestamp = {2012.10.01},
Title = {The C Programming Language},
Year = {1988}}
@book{kirk2010programming,
Author = {Kirk, D. and Wen-mei, W.H. and Hwu, W.},
Owner = {niemi},
Publisher = {Morgan Kaufmann},
Timestamp = {2012.05.21},
Title = {Programming massively parallel processors: a hands-on approach},
Year = {2010}}
@article{lee2010utility,
Author = {Lee, A. and Yau, C. and Giles, M.B. and Doucet, A. and Holmes, C.C.},
Journal = {Journal of Computational and Graphical Statistics},
Number = {4},
Owner = {niemi},
Pages = {769--789},
Publisher = {ASA},
Timestamp = {2012.05.21},
Title = {On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods},
Volume = {19},
Year = {2010}}
@misc{pguide,
Howpublished = {\url{http://docs.nvidia.com/cuda/cuda-c-programming-guide/index.html}},
Title = {NVIDIA CUDA C Programming Guide}
}
@misc{numpy,
Howpublished = {\url{http://www.scipy.org/Tentative_NumPy_Tutorial}},
Title = {Tentative NumPy Tutorial},
Author = {Rangarajan, A.}
}
@book{savitch,
Author = {Savitch, Walter},
Edition = {3},
Owner = {Landau},
Publisher = {Pearson},
Timestamp = {2012.10.01},
Title = {Absolute C++},
Year = {2008}}
@book{sanders2010cuda,
Author = {Sanders, J. and Kandrot, E.},
Owner = {niemi},
Publisher = {Addison-Wesley},
Timestamp = {2012.05.21},
Title = {CUDA by Example},
Year = {2010}}
@misc{scipy,
Title = {SciPy Tutorial},
Howpublished = {\url{http://docs.scipy.org/doc/scipy/reference/tutorial/general.html}},
}
@article{suchard2010understanding,
Author = {Suchard, M.A. and Wang, Q. and Chan, C. and Frelinger, J. and Cron, A. and West, M.},
Journal = {Journal of Computational and Graphical Statistics},
Number = {2},
Owner = {niemi},
Pages = {419--438},
Publisher = {ASA},
Timestamp = {2012.05.21},
Title = {Understanding GPU programming for statistical computation: Studies in massively parallel massive mixtures},
Volume = {19},
Year = {2010}}
@misc{quickstart,
Date-Added = {2012-10-07 09:50:26 +0000},
Date-Modified = {2012-10-07 09:51:19 +0000},
Howpublished = {\url{http://code.google.com/p/thrust/wiki/QuickStartGuide}},
Month = {March},
Title = {Thrust Quick Start Guide},
Year = {2012}}