fiji-cmtk-gui

Working version of a simple GUI frontend for CMTK image registration tools in Fiji

Install

Install Fiji
Enable the CMTK Registration update site (http://sites.imagej.net/Jefferis), by following these detailed instructions. The update window should look something like this: ![Fiji Update Site Dialog](Web Resources/Fiji_CMTK_update_site.png "Update Site").
Run Plugins>CMTK Registration>Install CMTK to install CMTK

Use

CMTK Registration GUI is the main entry point
See Jefferis Lab Wiki

Update

Use the Fiji updater to update files (but see below for Developer Install/Update)
To update the CMTK registration software, choose Install CMTK
- This will compare the current version on the CMTK website with the installed version and offer to update if appropriate.

Problems

If you have trouble please check the list of previously reported bugs. There may already be a solution.
See also the NITRC CMTK User Forum

Developer Install

Download the zip file for this repository
Expand the zip file
Rename the newly expanded folder to CMTK_Registration
Move this inside the plugins subfolder of Fiji
- To see this folder on a Mac you need to show Fiji in the Finder
- Then Right Click and choose Show Package Contents
- then navigate to the plugins subfolder
(Re)start Fiji
Choose Plugins ... CMTK Registration ... Install CMTK

Developer Update

To update the code for this GUI, choose Update to Development CMTK GUI