DESCRIPTION

Package: splicejam
Type: Package
Title: Analysis and Visualization of Gene Splice Variants and Transcriptome Data
Version: 0.0.83.900
Authors@R: c(
    person(given="James M.",
       family="Ward",
       email="jmw86069@gmail.com",
       comment=c(ORCID="0000-0002-9510-2848"),
       role=c("aut", "cre")),
    person(given="Shannon",
       family="Farris",
       comment=c(ORCID="0000-0003-4473-1684"),
       role=c("aut"))
    )
Maintainer: James M. Ward <jmw86069@gmail.com>
Description: Jam Bioinformatics methods for RNA-seq and other genomics
    analysis methods. Sashimi coverage plots for RNA-seq, transcript isoform
    analysis methods to define detected isoforms from RNA-seq data, supporting
    methods for manipulating gene expression data.
Depends: R (>= 3.0.0)
biocViews:
Imports: jamba(>= 0.0.102.900),
    jamma(>= 0.0.33.900),
    colorjam(>= 0.0.28.900),
    data.table,
    GenomicRanges,
    GenomicFeatures,
    SummarizedExperiment,
    limma,
    S4Vectors,
    arules,
    ggplot2,
    ggforce(>= 0.3.1),
    rtracklayer,
    ggrepel,
    plyr,
    dplyr,
    shiny,
    shinydashboard,
    shinydashboardPlus(>= 2.0.0),
    shinyWidgets,
    shinyjqui,
    shinycssloaders,
    shinyjs,
    cowplot,
    plotly,
    DT,
    memoise(>= 2.0.1.9000),
    testthat(>= 3.0.0),
    R.utils
Suggests: 
    made4,
    openxlsx,
    knitr,
    rmarkdown,
    tximport,
    tximportData,
    TxDb.Mmusculus.UCSC.mm10.knownGene,
    org.Mm.eg.db,
    farrisdata(>= 0.0.9.900)
License: GPL-2
Encoding: UTF-8
LazyData: true
Remotes: github::jmw86069/jamba,
    github::jmw86069/colorjam,
    github::jmw86069/jamma,
    github::jmw86069/farrisdata,
    github::r-lib/memoise,
    github::RinteRface/shinydashboardPlus
URL: http://github.com/jmw86069/splicejam
BugReports: http://github.com/jmw86069/splicejam/issues
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
VignetteBuilder: knitr