-
Notifications
You must be signed in to change notification settings - Fork 2
/
conda_env.yml
327 lines (327 loc) · 10.4 KB
/
conda_env.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
name: mpies
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aioeasywebdav=2.4.0=py39hf3d152e_1001
- aiohttp=3.8.1=py39hb9d737c_1
- aiosignal=1.2.0=pyhd8ed1ab_0
- alsa-lib=1.2.7.2=h166bdaf_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- asn1crypto=1.5.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=22.1.0=pyh71513ae_1
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.2=py39hb9d737c_0
- biopython=1.79=py39hb9d737c_2
- blas=1.1=openblas
- blas-devel=3.9.0=16_linux64_openblas
- boost=1.77.0=py39h5472131_0
- boost-cpp=1.77.0=h359cf19_1
- boto3=1.24.66=pyhd8ed1ab_0
- botocore=1.27.66=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_7
- brotli-bin=1.0.9=h166bdaf_7
- brotlipy=0.7.0=py39hb9d737c_1004
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.14=ha878542_0
- cachetools=5.2.0=pyhd8ed1ab_0
- cairo=1.16.0=ha12eb4b_1010
- cd-hit-auxtools=4.8.1=h9f5acd7_2
- certifi=2022.9.14=pyhd8ed1ab_0
- cffi=1.15.1=py39he91dace_0
- chardet=5.0.0=py39hf3d152e_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- coin-or-cbc=2.10.8=h3786ebc_0
- coin-or-cgl=0.60.6=h6f57e76_1
- coin-or-clp=1.17.7=hc56784d_1
- coin-or-osi=0.108.7=h2720bb7_1
- coin-or-utils=2.11.6=h202d8b1_1
- coincbc=2.10.8=0_metapackage
- commonmark=0.9.1=py_0
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=37.0.4=py39hd97740a_0
- cryptography-vectors=37.0.4=pyhd8ed1ab_0
- cycler=0.11.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- datrie=0.8.2=py39h3811e60_3
- dbus=1.13.6=h5008d03_3
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- diamond=0.9.19=h2e03b76_5
- docutils=0.19=py39hf3d152e_0
- dpath=2.0.6=py39hf3d152e_1
- dropbox=11.34.0=pyhd8ed1ab_0
- et_xmlfile=1.0.1=py_1001
- ete3=3.1.2=pyh9f0ad1d_0
- expat=2.4.8=h27087fc_0
- fftw=3.3.10=nompi_hf0379b8_105
- filechunkio=1.8=py_2
- filelock=3.8.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=h8e229c2_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.37.1=py39hb9d737c_0
- fraggenescan=1.31=hec16e2b_4
- freetype=2.12.1=hca18f0e_0
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.1=py39hb9d737c_0
- ftputil=5.0.4=pyhd8ed1ab_0
- future=0.18.2=py39hf3d152e_5
- gdk-pixbuf=2.42.8=hff1cb4f_0
- gettext=0.19.8.1=h73d1719_1008
- ghostscript=9.54.0=h27087fc_2
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.27=pyhd8ed1ab_0
- glib=2.72.1=h6239696_0
- glib-tools=2.72.1=h6239696_0
- google-api-core=2.10.0=pyhd8ed1ab_0
- google-api-python-client=2.58.0=pyhd8ed1ab_0
- google-auth=2.11.0=pyh6c4a22f_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.5.0=pyh6c4a22f_0
- google-crc32c=1.1.2=py39h8db88ab_3
- google-resumable-media=2.3.3=pyhd8ed1ab_0
- googleapis-common-protos=1.56.4=py39hf3d152e_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=3.0.0=h5abf519_1
- grpc-cpp=1.48.1=h05bd8bd_1
- grpcio=1.48.1=py39h712372c_1
- gst-plugins-base=1.20.3=h57caac4_1
- gstreamer=1.20.3=hd4edc92_1
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h64030ff_2
- harfbuzz=4.2.0=h40b6f09_0
- httplib2=0.20.4=pyhd8ed1ab_0
- icu=69.1=h9c3ff4c_0
- idna=3.3=pyhd8ed1ab_0
- idna_ssl=1.1.0=py39hde42818_1001
- imagemagick=7.1.0_29=pl5321heb7c40d_0
- importlib-metadata=4.11.4=py39hf3d152e_0
- importlib_resources=5.9.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- intel-openmp=2022.0.1=h06a4308_3633
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- jsonschema=4.15.0=pyhd8ed1ab_0
- jupyter_core=4.11.1=py39hf3d152e_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py39hf939315_0
- krb5=1.19.3=h3790be6_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=4.0.0=h27087fc_0
- libabseil=20220623.0=cxx17_h48a1fff_3
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_7
- libbrotlidec=1.0.9=h166bdaf_7
- libbrotlienc=1.0.9=h166bdaf_7
- libcblas=3.9.0=16_linux64_openblas
- libclang=13.0.1=default_hc23dcda_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.1.0=h8d9b700_16
- libgd=2.3.3=h283352f_2
- libgfortran=3.0.0=1
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libglib=2.72.1=h2d90d5f_0
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libllvm11=11.1.0=hf817b99_3
- libllvm13=13.0.1=hf817b99_2
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopus=1.3.1=h7f98852_1
- libpng=1.6.37=h753d276_4
- libpq=14.5=hd77ab85_0
- libprotobuf=3.21.5=h6239696_0
- librsvg=2.52.5=h0a9e6e8_3
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.39.3=h753d276_0
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtiff=4.4.0=h0e0dad5_3
- libtool=2.4.6=h9c3ff4c_1008
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp=1.2.4=h522a892_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h885dcf4_1
- libxslt=1.1.33=h0ef7038_3
- libzlib=1.2.12=h166bdaf_2
- llvm-openmp=14.0.4=he0ac6c6_0
- logmuse=0.2.6=pyh8c360ce_0
- lxml=4.8.0=py39hb9d737c_2
- lz4-c=1.9.3=h9c3ff4c_1
- markupsafe=2.1.1=py39hb9d737c_1
- matplotlib-base=3.5.3=py39h19d6b11_2
- megahit=1.2.9=h2e03b76_1
- megan=6.21.7=h9ee0642_0
- mkl=2022.0.1=h06a4308_117
- mkl_fft=1.3.1=py39h1fd5c3a_3
- mkl_random=1.2.2=py39h8b66066_1
- more-itertools=8.14.0=pyhd8ed1ab_0
- multidict=6.0.2=py39hb9d737c_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.30=haf5c9bc_1
- mysql-libs=8.0.30=h28c427c_1
- nbformat=5.4.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- networkx=2.8.6=pyhd8ed1ab_0
- nspr=4.32=h9c3ff4c_1
- nss=3.78=h2350873_0
- numpy=1.23.1=py39hf838250_0
- numpy-base=1.23.1=py39h1e6e340_0
- oauth2client=4.1.3=py_0
- olefile=0.46=pyh9f0ad1d_1
- openblas=0.3.21=pthreads_h320a7e8_3
- openjdk=11.0.1=h516909a_1016
- openjpeg=2.4.0=hb52868f_1
- openpyxl=3.0.10=py39hb9d737c_1
- openssl=1.1.1q=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.4.4=py39h1832856_0
- pango=1.50.7=hbd2fdc8_0
- paramiko=2.11.0=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- peppy=0.35.0=pyhd8ed1ab_0
- perl=5.32.1=2_h7f98852_perl5
- pillow=9.2.0=py39hae2aec6_1
- pip=22.2.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- plac=1.3.5=pyhd8ed1ab_0
- pluggy=1.0.0=py39hf3d152e_3
- ply=3.11=py_1
- prettytable=3.4.1=pyhd8ed1ab_0
- prodigal=2.6.3=hec16e2b_4
- protobuf=4.21.5=py39h5a03fae_1
- psutil=5.9.2=py39hb9d737c_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.6.0=py39hf3d152e_1
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.13.0=pyhd8ed1ab_0
- pygraphviz=1.9=py39hcd39427_2
- pynacl=1.5.0=py39hb9d737c_1
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.12.3=py39hf3d152e_7
- pyqt-impl=5.12.3=py39h0fcd23e_7
- pyqt5-sip=4.19.18=py39he80948d_7
- pyqtchart=5.12=py39h0fcd23e_7
- pyqtwebengine=5.12.1=py39h0fcd23e_7
- pyrsistent=0.18.1=py39hb9d737c_1
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py39hf3d152e_5
- pytest=7.1.3=py39hf3d152e_0
- python=3.9.13=h9a8a25e_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.1=pyhd8ed1ab_0
- python-irodsclient=1.1.4=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytz=2022.2.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py39hb9d737c_4
- qt=5.12.9=h1304e3e_6
- ratelimiter=1.2.0=py_1002
- re2=2022.06.01=h27087fc_0
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- retry=0.9.2=py_0
- rich=12.5.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- s3transfer=0.6.0=pyhd8ed1ab_0
- scipy=1.9.1=py39h8ba3f38_0
- setuptools=65.3.0=py39hf3d152e_0
- simplejson=3.17.6=py39hb9d737c_1
- sip=6.6.2=py39h5a03fae_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.1.0=pyha770c72_1
- smmap=3.0.5=pyh44b312d_0
- snakemake=7.14.0=hdfd78af_0
- snakemake-minimal=7.14.0=pyhdfd78af_0
- spades=3.13.1=0
- sqlite=3.39.3=h4ff8645_0
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabulate=0.8.10=pyhd8ed1ab_0
- tbb=2021.5.0=h924138e_1
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.7=pyhd8ed1ab_0
- tornado=6.2=py39hb9d737c_0
- traitlets=5.3.0=pyhd8ed1ab_0
- trimmomatic=0.39=hdfd78af_2
- typing-extensions=4.3.0=hd8ed1ab_0
- typing_extensions=4.3.0=pyha770c72_0
- tzdata=2022c=h191b570_0
- ubiquerg=0.6.2=pyhd8ed1ab_0
- unicodedata2=14.0.0=py39hb9d737c_1
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.11=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.37.1=pyhd8ed1ab_0
- wrapt=1.14.1=py39hb9d737c_0
- xlrd=2.0.1=pyhd8ed1ab_3
- xmlrunner=1.7.7=py_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxpm=3.5.13=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yarl=1.7.2=py39hb9d737c_2
- yte=1.5.1=py39hf3d152e_0
- zipp=3.8.1=pyhd8ed1ab_0
- zlib=1.2.12=h166bdaf_2
- zstd=1.5.2=h6239696_4
prefix: /data/miniconda3/envs/mpies