From 16c92f15e281bbfde0b6dab8f2a3db3dd6a35c7d Mon Sep 17 00:00:00 2001 From: jonhealy1 Date: Thu, 24 Feb 2022 02:15:49 -0800 Subject: [PATCH 1/5] add ingest to makefile --- Makefile | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 36df7d5..a9e998f 100644 --- a/Makefile +++ b/Makefile @@ -40,4 +40,8 @@ pybase-install: .PHONY: install install: pybase-install - pip install -e ./stac_fastapi/mongo[dev,server] \ No newline at end of file + pip install -e ./stac_fastapi/mongo[dev,server] + +.PHONY: ingest +ingest: + python3 data_loader/data_loader.py \ No newline at end of file From 49c0169f3ab226128e4669710dd9b02712dcdebc Mon Sep 17 00:00:00 2001 From: jonhealy1 Date: Thu, 24 Feb 2022 02:16:00 -0800 Subject: [PATCH 2/5] v2.3.2 --- VERSION | 2 +- stac_fastapi/mongo/stac_fastapi/mongo/version.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/VERSION b/VERSION index a625450..e703481 100644 --- a/VERSION +++ b/VERSION @@ -1 +1 @@ -2.3.1 \ No newline at end of file +2.3.2 \ No newline at end of file diff --git a/stac_fastapi/mongo/stac_fastapi/mongo/version.py b/stac_fastapi/mongo/stac_fastapi/mongo/version.py index 27ab2a3..e126cdd 100644 --- a/stac_fastapi/mongo/stac_fastapi/mongo/version.py +++ b/stac_fastapi/mongo/stac_fastapi/mongo/version.py @@ -1,2 +1,2 @@ """library version.""" -__version__ = "2.3.1" +__version__ = "2.3.2" From 27024da68e32d912b4225475a9a407e5a72cc679 Mon Sep 17 00:00:00 2001 From: jonhealy1 Date: Thu, 24 Feb 2022 02:16:08 -0800 Subject: [PATCH 3/5] add data loader --- data_loader/data_loader.py | 59 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 59 insertions(+) create mode 100644 data_loader/data_loader.py diff --git a/data_loader/data_loader.py b/data_loader/data_loader.py new file mode 100644 index 0000000..75c60e4 --- /dev/null +++ b/data_loader/data_loader.py @@ -0,0 +1,59 @@ +"""Database ingestion script.""" +import json +import os + +import click +import requests + +DATA_DIR = os.path.join(os.path.dirname(__file__), "setup_data/") +STAC_API_BASE_URL = "http://localhost:8083" + + +def load_data(filename): + """Load json data.""" + with open(os.path.join(DATA_DIR, filename)) as file: + return json.load(file) + + +def load_collection(collection_id): + """Load stac collection into the database.""" + collection = load_data("collection.json") + collection["id"] = collection_id + try: + resp = requests.post(f"{STAC_API_BASE_URL}/collections", json=collection) + if resp.status_code == 200: + print(f"Status code: {resp.status_code}") + print(f"Added collection: {collection['id']}") + elif resp.status_code == 409: + print(f"Status code: {resp.status_code}") + print(f"Collection: {collection['id']} already exists") + except requests.ConnectionError: + click.secho("failed to connect") + + +def load_items(): + """Load stac items into the database.""" + feature_collection = load_data("sentinel-s2-l2a-cogs_0_100.json") + collection = "test-collection" + load_collection(collection) + + for feature in feature_collection["features"]: + try: + feature["stac_extensions"] = [] + feature["stac_version"] = "1.0.0" + feature["collection"] = collection + resp = requests.post( + f"{STAC_API_BASE_URL}/collections/{collection}/items", json=feature + ) + + if resp.status_code == 200: + print(f"Status code: {resp.status_code}") + print(f"Added item: {feature['id']}") + elif resp.status_code == 409: + print(f"Status code: {resp.status_code}") + print(f"Item: {feature['id']} already exists") + except requests.ConnectionError: + click.secho("failed to connect") + + +load_items() From 0b5f6d5e91257a7f2f84167c6d0a3ab769406f7a Mon Sep 17 00:00:00 2001 From: jonhealy1 Date: Thu, 24 Feb 2022 02:16:21 -0800 Subject: [PATCH 4/5] add sentinel data --- data_loader/setup_data/collection.json | 93 +++++++++++++++++++ .../sentinel-s2-l2a-cogs_0_100.json | 1 + 2 files changed, 94 insertions(+) create mode 100644 data_loader/setup_data/collection.json create mode 100644 data_loader/setup_data/sentinel-s2-l2a-cogs_0_100.json diff --git a/data_loader/setup_data/collection.json b/data_loader/setup_data/collection.json new file mode 100644 index 0000000..b3a7446 --- /dev/null +++ b/data_loader/setup_data/collection.json @@ -0,0 +1,93 @@ +{ + "id":"sentinel-s2-l2a-cogs", + "stac_version":"1.0.0-beta.2", + "description":"Sentinel-2a and Sentinel-2b imagery, processed to Level 2A (Surface Reflectance) and converted to Cloud-Optimized GeoTIFFs", + "links":[ + {"rel":"self","href":"https://earth-search.aws.element84.com/v0/collections/sentinel-s2-l2a-cogs"}, + {"rel":"license","href":"https://sentinel.esa.int/documents/247904/690755/Sentinel_Data_Legal_Notice"}, + {"rel":"about","href":"https://github.com/stac-utils/stac-sentinel"}, + {"rel":"parent","href":"https://earth-search.aws.element84.com/v0/"}, + {"rel":"root","href":"https://earth-search.aws.element84.com/v0/"}, + {"rel":"items","href":"https://earth-search.aws.element84.com/v0/collections/sentinel-s2-l2a-cogs/items"} + ], + "stac_extensions":["item-assets"], + "title":"Sentinel 2 L2A COGs", + "keywords":["sentinel","earth observation","esa"], + "providers":[ + {"name":"ESA","roles":["producer"],"url":"https://earth.esa.int/web/guest/home"}, + {"name":"Sinergise","roles":["processor"],"url":"https://registry.opendata.aws/sentinel-2/"}, + {"name":"AWS","roles":["host"],"url":"http://sentinel-pds.s3-website.eu-central-1.amazonaws.com/"}, + {"name":"Element 84","roles":["processor"],"url":"https://element84.com"} + ], + "summaries":{ + "platform":["sentinel-2a","sentinel-2b"], + "constellation":["sentinel-2"], + "instruments":["msi"], + "gsd":[10], + "view:off_nadir":[0] + }, + "item_assets":{ + "thumbnail":{ + "title":"Thumbnail", + "type":"image/png", + "roles":["thumbnail"] + }, + "overview":{ + "title":"True color image", + "type":"image/tiff; application=geotiff; profile=cloud-optimized", + "roles":["overview"], + "gsd":10, + "eo:bands":[ + {"name":"B04","common_name":"red","center_wavelength":0.6645,"full_width_half_max":0.038}, + {"name":"B03","common_name":"green","center_wavelength":0.56,"full_width_half_max":0.045}, + {"name":"B02","common_name":"blue","center_wavelength":0.4966,"full_width_half_max":0.098} + ] + }, + "info":{ + "title":"Original JSON metadata", + "type":"application/json", + "roles":["metadata"] + }, + "metadata":{ + "title":"Original XML metadata", + "type":"application/xml", + "roles":["metadata"] + }, + "visual":{ + "title":"True color image", + "type":"image/tiff; application=geotiff; profile=cloud-optimized", + "roles":["overview"], + "gsd":10, + "eo:bands":[ + {"name":"B04","common_name":"red","center_wavelength":0.6645,"full_width_half_max":0.038}, + {"name":"B03","common_name":"green","center_wavelength":0.56,"full_width_half_max":0.045}, + {"name":"B02","common_name":"blue","center_wavelength":0.4966,"full_width_half_max":0.098} + ] + }, + "B01":{ + "title":"Band 1 (coastal)", + "type":"image/tiff; application=geotiff; profile=cloud-optimized", + "roles":["data"], + "gsd":60, + "eo:bands":[ + {"name":"B01","common_name":"coastal","center_wavelength":0.4439,"full_width_half_max":0.027} + ] + }, + "B02":{ + "title":"Band 2 (blue)", + "type":"image/tiff; application=geotiff; profile=cloud-optimized", + "roles":["data"], + "gsd":10, + "eo:bands":[ + {"name":"B02","common_name":"blue","center_wavelength":0.4966,"full_width_half_max":0.098} + ] + }, + "B03":{ + "title":"Band 3 (green)", + "type":"image/tiff; application=geotiff; profile=cloud-optimized", + "roles":["data"], + "gsd":10, + "eo:bands":[ + {"name":"B03","common_name":"green","center_wavelength":0.56,"full_width_half_max":0.045} + ] + },"B04":{"title":"Band 4 (red)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":10,"eo:bands":[{"name":"B04","common_name":"red","center_wavelength":0.6645,"full_width_half_max":0.038}]},"B05":{"title":"Band 5","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":20,"eo:bands":[{"name":"B05","center_wavelength":0.7039,"full_width_half_max":0.019}]},"B06":{"title":"Band 6","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":20,"eo:bands":[{"name":"B06","center_wavelength":0.7402,"full_width_half_max":0.018}]},"B07":{"title":"Band 7","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":20,"eo:bands":[{"name":"B07","center_wavelength":0.7825,"full_width_half_max":0.028}]},"B08":{"title":"Band 8 (nir)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":10,"eo:bands":[{"name":"B08","common_name":"nir","center_wavelength":0.8351,"full_width_half_max":0.145}]},"B8A":{"title":"Band 8A","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":20,"eo:bands":[{"name":"B8A","center_wavelength":0.8648,"full_width_half_max":0.033}]},"B09":{"title":"Band 9","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":60,"eo:bands":[{"name":"B09","center_wavelength":0.945,"full_width_half_max":0.026}]},"B11":{"title":"Band 11 (swir16)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":20,"eo:bands":[{"name":"B11","common_name":"swir16","center_wavelength":1.6137,"full_width_half_max":0.143}]},"B12":{"title":"Band 12 (swir22)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"],"gsd":20,"eo:bands":[{"name":"B12","common_name":"swir22","center_wavelength":2.22024,"full_width_half_max":0.242}]},"AOT":{"title":"Aerosol Optical Thickness (AOT)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"]},"WVP":{"title":"Water Vapour (WVP)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"]},"SCL":{"title":"Scene Classification Map (SCL)","type":"image/tiff; application=geotiff; profile=cloud-optimized","roles":["data"]}},"extent":{"spatial":{"bbox":[[-180,-90,180,90]]},"temporal":{"interval":[["2015-06-27T10:25:31.456000Z",null]]}},"license":"proprietary"} \ No newline at end of file diff --git a/data_loader/setup_data/sentinel-s2-l2a-cogs_0_100.json b/data_loader/setup_data/sentinel-s2-l2a-cogs_0_100.json new file mode 100644 index 0000000..e7ea4f1 --- /dev/null +++ b/data_loader/setup_data/sentinel-s2-l2a-cogs_0_100.json @@ -0,0 +1 @@ +{"type": "FeatureCollection", "features": [{"type": "Feature", "stac_version": "1.0.0-beta.2", "stac_extensions": ["eo", "view", "proj"], "id": "S2B_1CCV_20181004_0_L2A", "bbox": [176.86465735875524, -72.9927453068842, 178.4336680925981, -72.0124876694908], "geometry": {"type": "Polygon", "coordinates": [[[176.90734876525534, -72.9927453068842], [176.86465735875524, -72.99146546737437], [177.18936642547558, -72.0124876694908], [178.4336680925981, -72.04567023611742], [177.63304373965198, -72.55414509715332], [176.90734876525534, -72.9927453068842]]]}, "properties": {"datetime": "2018-10-04T21:05:21Z", "platform": "sentinel-2b", "constellation": "sentinel-2", "instruments": ["msi"], "gsd": 10, "data_coverage": 20.18, "view:off_nadir": 0, "eo:cloud_cover": 17.19, "proj:epsg": 32701, "sentinel:latitude_band": "C", "sentinel:grid_square": "CV", "sentinel:sequence": "0", "sentinel:product_id": "S2B_MSIL2A_20181004T210519_N0001_R071_T01CCV_20200307T115707", "created": "2020-08-30T10:49:43.719Z", "updated": "2020-08-30T10:49:43.719Z", "sentinel:valid_cloud_cover": true, "sentinel:utm_zone": 1, "sentinel:data_coverage": 20.18}, "collection": "sentinel-s2-l2a-cogs", "assets": {"thumbnail": {"title": "Thumbnail", "type": "image/png", "href": "https://roda.sentinel-hub.com/sentinel-s2-l1c/tiles/1/C/CV/2018/10/4/0/preview.jpg", "roles": ["thumbnail"]}, "overview": {"title": "True color image", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/L2A_PVI.tif", "roles": ["overview"], "eo:bands": [{"full_width_half_max": 0.038, "center_wavelength": 0.6645, "name": "B04", "common_name": "red"}, {"full_width_half_max": 0.045, "center_wavelength": 0.56, "name": "B03", "common_name": "green"}, {"full_width_half_max": 0.098, "center_wavelength": 0.4966, "name": "B02", "common_name": "blue"}], "gsd": 10, "proj:shape": [343, 343], "proj:transform": [320.0, 0.0, 300000.0, 0.0, -320.0, 2000020.0, 0.0, 0.0, 1.0]}, "info": {"title": "Original JSON metadata", "type": "application/json", "href": "https://roda.sentinel-hub.com/sentinel-s2-l2a/tiles/1/C/CV/2018/10/4/0/tileInfo.json", "roles": ["metadata"]}, "metadata": {"title": "Original XML metadata", "type": "application/xml", "href": "https://roda.sentinel-hub.com/sentinel-s2-l2a/tiles/1/C/CV/2018/10/4/0/metadata.xml", "roles": ["metadata"]}, "visual": {"title": "True color image", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/TCI.tif", "roles": ["overview"], "eo:bands": [{"full_width_half_max": 0.038, "center_wavelength": 0.6645, "name": "B04", "common_name": "red"}, {"full_width_half_max": 0.045, "center_wavelength": 0.56, "name": "B03", "common_name": "green"}, {"full_width_half_max": 0.098, "center_wavelength": 0.4966, "name": "B02", "common_name": "blue"}], "gsd": 10, "proj:shape": [10980, 10980], "proj:transform": [10.0, 0.0, 300000.0, 0.0, -10.0, 2000020.0, 0.0, 0.0, 1.0]}, "B01": {"title": "Band 1 (coastal)", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B01.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.027, "center_wavelength": 0.4439, "name": "B01", "common_name": "coastal"}], "gsd": 60, "proj:shape": [1830, 1830], "proj:transform": [60.0, 0.0, 300000.0, 0.0, -60.0, 2000020.0, 0.0, 0.0, 1.0]}, "B02": {"title": "Band 2 (blue)", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B02.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.098, "center_wavelength": 0.4966, "name": "B02", "common_name": "blue"}], "gsd": 10, "proj:shape": [10980, 10980], "proj:transform": [10.0, 0.0, 300000.0, 0.0, -10.0, 2000020.0, 0.0, 0.0, 1.0]}, "B03": {"title": "Band 3 (green)", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B03.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.045, "center_wavelength": 0.56, "name": "B03", "common_name": "green"}], "gsd": 10, "proj:shape": [10980, 10980], "proj:transform": [10.0, 0.0, 300000.0, 0.0, -10.0, 2000020.0, 0.0, 0.0, 1.0]}, "B04": {"title": "Band 4 (red)", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B04.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.038, "center_wavelength": 0.6645, "name": "B04", "common_name": "red"}], "gsd": 10, "proj:shape": [10980, 10980], "proj:transform": [10.0, 0.0, 300000.0, 0.0, -10.0, 2000020.0, 0.0, 0.0, 1.0]}, "B05": {"title": "Band 5", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B05.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.019, "center_wavelength": 0.7039, "name": "B05"}], "gsd": 20, "proj:shape": [5490, 5490], "proj:transform": [20.0, 0.0, 300000.0, 0.0, -20.0, 2000020.0, 0.0, 0.0, 1.0]}, "B06": {"title": "Band 6", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B06.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.018, "center_wavelength": 0.7402, "name": "B06"}], "gsd": 20, "proj:shape": [5490, 5490], "proj:transform": [20.0, 0.0, 300000.0, 0.0, -20.0, 2000020.0, 0.0, 0.0, 1.0]}, "B07": {"title": "Band 7", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B07.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.028, "center_wavelength": 0.7825, "name": "B07"}], "gsd": 20, "proj:shape": [5490, 5490], "proj:transform": [20.0, 0.0, 300000.0, 0.0, -20.0, 2000020.0, 0.0, 0.0, 1.0]}, "B08": {"title": "Band 8 (nir)", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/CV/2018/10/S2B_1CCV_20181004_0_L2A/B08.tif", "roles": ["data"], "eo:bands": [{"full_width_half_max": 0.145, "center_wavelength": 0.8351, "name": "B08", "common_name": "nir"}], "gsd": 10, "proj:shape": [10980, 10980], "proj:transform": [10.0, 0.0, 300000.0, 0.0, -10.0, 2000020.0, 0.0, 0.0, 1.0]}, "B8A": {"title": "Band 8A", "type": "image/tiff; application=geotiff; profile=cloud-optimized", "href": 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"http://discovery-cosmos.azurewebsites.net/stac/collections/sentinel-s2-l2a-cogs/items/S2B_1CDH_20191230_0_L2A"}, {"rel": "canonical", "href": "https://sentinel-cogs.s3.us-west-2.amazonaws.com/sentinel-s2-l2a-cogs/1/C/DH/2019/12/S2B_1CDH_20191230_0_L2A/S2B_1CDH_20191230_0_L2A.json", "type": "application/json"}, {"title": "Source STAC Item", "rel": "derived_from", "href": "https://earth-search.aws.element84.com/v0/collections/sentinel-s2-l2a/items/S2B_1CDH_20191230_0_L2A", "type": "application/json"}, {"rel": "parent", "href": "http://discovery-cosmos.azurewebsites.net/stac/collections/sentinel-s2-l2a-cogs"}, {"rel": "collection", "href": "http://discovery-cosmos.azurewebsites.net/stac/collections/sentinel-s2-l2a-cogs"}, {"rel": "root", "href": "http://discovery-cosmos.azurewebsites.net/stac/"}], "version": "1.0.0"}]} \ No newline at end of file From fa3e4b6969f3403f2e89884a6ae3cda9b3bda4b4 Mon Sep 17 00:00:00 2001 From: jonhealy1 Date: Thu, 24 Feb 2022 02:16:38 -0800 Subject: [PATCH 5/5] fix homepage --- stac_fastapi/mongo/setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stac_fastapi/mongo/setup.py b/stac_fastapi/mongo/setup.py index f0737ca..c617493 100644 --- a/stac_fastapi/mongo/setup.py +++ b/stac_fastapi/mongo/setup.py @@ -47,7 +47,7 @@ keywords="STAC FastAPI COG", author=u"Arturo Engineering", author_email="engineering@arturo.ai", - url="https://github.com/jonhealy1/stac-fastapi-nosql", + url="https://github.com/jonhealy1/stac-fastapi-mongo", license="MIT", packages=find_namespace_packages(exclude=["alembic", "tests", "scripts"]), zip_safe=False,