biblio.bib

@book{marechal2012mitochondrial,
  title={Mitochondrial Genome Evolution},
  editor={Marechal-Drouart, Laurence},
  author={Budar, Françoise and Fujii, Sota},
  chapter={5},
  volume={63},
  year={2012},
  publisher={Academic Press}
}

@article{moison2010cytoplasmic,
  title={Cytoplasmic phylogeny and evidence of cyto-nuclear co-adaptation in Arabidopsis thaliana},
  author={Moison, Micha{\"e}l and Roux, Fabrice and Quadrado, Martine and Duval, Romain and Ekovich, Muriel and L{\^e}, Duc-Hoa and Verzaux, Marie and Budar, Fran{\c{c}}oise},
  journal={The Plant Journal},
  volume={63},
  number={5},
  pages={728--738},
  year={2010},
  publisher={Wiley Online Library}
}

@article{mckhann2004nested,
  title={Nested core collections maximizing genetic diversity in Arabidopsis thaliana},
  author={McKhann, Heather I and Camilleri, Christine and B{\'e}rard, Aur{\'e}lie and Bataillon, Thomas and David, Jacques L and Reboud, Xavier and Le Corre, Val{\'e}rie and Caloustian, Christophe and Gut, Ivo G and Brunel, Dominique},
  journal={The Plant Journal},
  volume={38},
  number={1},
  pages={193--202},
  year={2004},
  publisher={Wiley Online Library}
}

@article{brown2012reference,
  title={A reference-free algorithm for computational normalization of shotgun sequencing data},
  author={Brown, C Titus and Howe, Adina and Zhang, Qingpeng and Pyrkosz, Alexis B and Brom, Timothy H},
  journal={arXiv preprint arXiv:1203.4802},
  year={2012}
}

@article{chr2, 
title={Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana}, 
DOI={10.1038/45471}, 
number={6763}, 
journal={Nature}, 
author={Xiaoying Lin and Samir Kaul and Steve Rounsley and Terrance P. Shea and Maria-Ines Benito and Christopher D. Town and Claire Y. Fujii and Tanya Mason and Cheryl L. Bowman and Mary Barnstead}, 
year={1999}, 
pages={761–768}
}

@article{simpson2012efficient,
  title={Efficient de novo assembly of large genomes using compressed data structures},
  author={Simpson, Jared T and Durbin, Richard},
  journal={Genome research},
  volume={22},
  number={3},
  pages={549--556},
  year={2012},
  publisher={Cold Spring Harbor Lab}
}

@article{arrieta2009diversity,
  title={Diversity of the Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity},
  author={Arrieta-Montiel, Maria P and Shedge, Vikas and Davila, Jaime and Christensen, Alan C and Mackenzie, Sally A},
  journal={Genetics},
  volume={183},
  number={4},
  pages={1261--1268},
  year={2009},
  publisher={Genetics Soc America}
}

@Misc{velvetcode,
author =   {Daniel Zerbino},
title =    {readCoherentGraph.c},
howpublished = {https://github.com/dzerbino/velvet/src/}
}