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| name: CI | |
| on: | |
| schedule: | |
| - cron: '45 01 30 * *' | |
| push: | |
| fork: | |
| jobs: | |
| test_utils: | |
| name: Check utils | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| steps: | |
| - name: checkout | |
| id: checkout | |
| uses: actions/checkout@v4 | |
| - name: Update pip | |
| run: python -m pip install --upgrade pip | |
| - name: Create venv | |
| run: python -m venv venv | |
| - name: Activate venv | |
| run: source venv/bin/activate | |
| - name: Cache venv | |
| uses: actions/cache@v4 | |
| with: | |
| path: venv | |
| key: ${{ runner.os }}-${{ hashFiles('./utils/requirements.txt') }} | |
| - name: setup environment | |
| id: setup | |
| run: python -m pip install -r ./utils/requirements.txt | |
| - name: list packages | |
| id: list_pakcages | |
| run: python -m pip list | |
| - name: check utils | |
| id: check_utils | |
| run: python -m pytest -n auto ./utils/tests/ | |
| badges: | |
| name: Add Google Colab Badges | |
| needs: test_utils | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| timeout-minutes: 5 | |
| steps: | |
| - name: checkout | |
| id: checkout | |
| uses: actions/checkout@v4 | |
| - name: Update pip | |
| run: python -m pip install --upgrade pip | |
| - name: setup environment | |
| id: setup | |
| run: python -m pip install bs4 jupyter lxml | |
| - name: Add/Update badges | |
| id: badges | |
| run: python ./utils/add_colab_main_buttons.py | |
| - name: Commit & push | |
| id: commit | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_message : "Clean ipynb ${{ github.sha }}" | |
| test_ipynb: | |
| needs: badges | |
| name: ${{ matrix.anaconda }} on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macOS-latest] | |
| anaconda: ["2023.09", "nightly"] | |
| fail-fast: false | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test-environment | |
| environment-file: ./tests/environment.${{ matrix.anaconda }}.yml | |
| use-only-tar-bz2: true | |
| - name: pytest | |
| env: | |
| TEST_IPYNB_IGNORE_FOLDER: tutorial | |
| run: | | |
| conda env list | |
| conda activate test-environment | |
| conda list | |
| python -m pytest --numprocesses=auto -k 'not (links or update_nmisp_py)' ./tests/ | |
| shell: bash -el {0} | |
| test_ipynb_colab: | |
| needs: badges | |
| name: test ipynb on Google Colab | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10.12' | |
| - name: Update pip | |
| run: python -m pip install --upgrade pip | |
| - name: Create venv | |
| run: python -m venv venv | |
| - name: Activate venv | |
| run: source venv/bin/activate | |
| - name: Cache venv | |
| uses: actions/cache@v4 | |
| with: | |
| path: venv | |
| key: ${{ runner.os }}-${{ hashFiles('./tests/requirements.colab.2024.02.txt') }} | |
| - name: install dependencies | |
| run: python -m pip install -r ./tests/requirements.colab.2024.02.txt | |
| - name: pytest | |
| env: | |
| TEST_IPYNB_IGNORE_FOLDER: tutorial | |
| run: python -m pytest -n auto -k 'not (links or update_nmisp_py)' ./tests | |
| update_nmisp_py: | |
| needs: [test_ipynb, test_ipynb_colab] | |
| name: Update nmisp_py | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| steps: | |
| - name: checkout | |
| id: checkout | |
| uses: actions/checkout@v4 | |
| - name: setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10.12' | |
| cache: 'pip' | |
| - name: Update pip | |
| run: python -m pip install --upgrade pip | |
| - name: run nmisp_py updater | |
| id: updater | |
| env: | |
| LOGIN_INFO: ${{ secrets.LOGIN_INFO }} | |
| run: python ./utils/update_nmisp_py.py |