MMB-114 Exploratory microbial research - lab course

👨‍💻 Antti Karkman
🏛️ University of Helsinki
✉️ antti.karkman@helsinki.fi

Genome analysis module of the course "MMB-114 Exploratory microbial research - lab course" of the University of Helsinki.

Learning outcomes

After completing this module, you will be able to:

• Choose the most adequate platform for your genome sequencing experiment
• Investigate and judge the quality of sequencing data
• Make use of a variety of tools to:
  • Process whole genome sequencing data
  • Assemble and annotate whole genome sequencing data
  • Predict metabolic pathways from assembled and annotated genomes

General instructions

• Software Installations

Course content

Activity
Day 1: UNIX and CSC	Lecture slides	Exercises
Day 2: Read trimming	Lecture slides	Exercises
Day 3: Checkup	No activities	No activities
Day 4: Genome assembly	Lecture slides	Exercises
Day 5: Genome annotation	Lecture slides	Exercises
Day 6: Metabolic pathway analysis	Lecture slides	Exercises