DESCRIPTION

Package: BandNorm
Type: Package
Title: BandNorm Method for single-cell Hi-C
Version: 0.1.0
Author:
    Ye Zheng <yezheng.stat@gmail.com> 
    Siqi Shen <sshen82@wisc.edu>
    Sunduz Keles <keles@stat.wisc.edu>
Maintainer: Siqi Shen <sshen82@wisc.edu>
Description: 
    BandNorm is a simple normalization method for cell-type identification 
    and other downstream analysis for single-cell Hi-C data. It aligns both the 
    library size difference and the distance effect among cells.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.6),
    ggplot2,
    dplyr,
    data.table,
    Rtsne,
    umap,
    progress,
    harmony,
    Matrix,
    gmodels,
    future.apply,
    matrixStats,
    Seurat,
    strawr,
    rmarkdown,
    viridis,
    sparsesvd,
    GenomicInteractions,
    GenomicRanges
RoxygenNote: 7.1.2
Suggests: 
    knitr,
    rmarkdown,
    markdown
VignetteBuilder: knitr
biocViews: 
Imports: 
    harmony,
    GenomicInteractions,
    GenomicRanges
Remotes: 
    immunogenomics/harmony