From 114404516a7f95fbb9c08f58e303c19e24033d9e Mon Sep 17 00:00:00 2001
From: Jason Kai <tkai@uwo.ca>
Date: Fri, 1 Mar 2024 12:27:11 -0500
Subject: [PATCH] Remove .bval and .bvec files from anat

New CFMM MP2RAGE sequence contains (0019, 100c) [B_value] in the DICOM
header, causing dcm2niix to interpret these images as diffusion and
generating a .bval and .bvec file.
---
 tar2bids | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/tar2bids b/tar2bids
index a671c6c..df6cdcf 100755
--- a/tar2bids
+++ b/tar2bids
@@ -465,6 +465,9 @@ rm -f $output_dir/*/*_scans.tsv $output_dir/*/*/*_scans.tsv
 rm -f $output_dir/*/fmap/*.bval $output_dir/*/*/fmap/*.bval
 rm -f $output_dir/*/fmap/*.bvec $output_dir/*/*/fmap/*.bvec
 
+# remove .bval and .bvec files from anat (dcm2niix picking up header suggesting MP2RAGE is diffusion)
+rm -f $output_dir/*/anat/*.bval $output_dir/*/*/anat/*.bval
+rm -f $output_dir/*/anat/*.bvec $output_dir/*/*/anat/*.bvec
 
 if [ "$do_deface" = "1" ]
 then