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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Who is Using Cytoscape?</title>
<meta name="description" content="Publications using Cytoscape.">
<meta name="author" content="Keiichiro Ono">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<script src="http://code.jquery.com/jquery-2.1.0.min.js"></script>
<link rel="stylesheet" href="http://netdna.bootstrapcdn.com/bootstrap/3.1.0/css/bootstrap.min.css">
<script src="http://netdna.bootstrapcdn.com/bootstrap/3.1.0/js/bootstrap.min.js"></script>
<link href="css/main.bootstrap.css" rel="stylesheet">
</head>
<body>
<div class="belt light-gray">
<div class="container">
<div class="row">
<div class="col-lg-6">
<h2>Featured Publications</h2>
<p class="lead">
Chen, R., Mias, G.I., Li-Pook-Than, J., Jiang, L., Lam, H.Y., Miriami, E., Karczewski,
K.J., Hariharan, M., Dewey, F.E., Cheng, Y., et al. (2012).
<a href="http://www.ncbi.nlm.nih.gov/pubmed/22424236">
Personal omics profiling reveals dynamic molecular and medical phenotypes.
</a>
Cell 148, 1293-1307.
</p>
<p class="lead">
Nature. 2011 May 26;473(7348):463-9.
<a href="http://www.ncbi.nlm.nih.gov/pubmed/21614073">
A 2020 vision for vaccines against HIV, tuberculosis and malaria.
</a>
Rappuoli R, Aderem A.
</p>
</div>
<div class="col-lg-6">
<h2>Research Using Cytoscape</h2>
<p>
<strong>
Many publications are citing
<a href="http://genome.cshlp.org/content/13/11/2498.long" target="_blank">
Shannon et al. (2003)
</a>.
</strong>
</p>
<ul>
<li>
<a href="http://scholar.google.com/scholar?cites=11328366010452110668">
View Full Listing at Google Scholar
</a>
</li>
<li>
<a href="http://www.pubmedcentral.nih.gov/tocrender.fcgi?action=cited&artid=403769">
Link to Listing at PubMed Central
</a>
</li>
<li>
<a href="http://highwire.stanford.edu/cgi/searchresults?fulltext=cytoscape&andorexactfulltext=and&author1=&pubdate_year=&volume=&firstpage=&src=hw&searchsubmit=redo&resourcetype=1&search=Search&fmonth=Jan&fyear=1844&tmonth=Jul&tyear=2007&fdatedef=1+January+1844&tdatedef=24+Jul+2007">
Link to HighWire Press
</a>
</li>
</ul>
<h2>Let us know about your publication!</h2>
<p>
If you have a publication
which makes use of Cytoscape, please let us know by sending an email to the
<a href="http://groups-beta.google.com/group/cytoscape-discuss">
cytoscape-discuss
</a>
mailing list or use <a href="community.html">other social media</a>.
</p>
</div>
</div>
</div>
</div>
<div class="snow-white">
<div class="container">
<h2>Share Your Work!</h2>
<p class="lead">
It is VERY important for Cytoscape project sustainability to keep track of
your publications making use of Cytoscape.
If you have Cytoscape-related publications, news/blog articles, or artworks,
please share them with others by <a href="community.html">social media services</a>.
</p>
<h3>2012</h3>
<ul>
<li>Chen, R., Mias, G.I., Li-Pook-Than, J., Jiang, L., Lam, H.Y., Miriami, E., Karczewski, K.J.,
Hariharan, M., Dewey, F.E., Cheng, Y., et al. (2012). Personal omics profiling reveals dynamic
molecular and medical phenotypes. Cell 148, 1293-1307.
</li>
<li>Ciofani, M., Madar, A., Galan, C., Sellars, M., Mace, K., Pauli, F., Agarwal, A., Huang, W.,
Parkurst, C.N., Muratet, M., et al. (2012). A validated regulatory network for th17 cell
specification. Cell 151, 289-303.
</li>
<li>Ellis, M.J., Ding, L., Shen, D., Luo, J., Suman, V.J., Wallis, J.W., Van Tine, B.A., Hoog, J.,
Goiffon, R.J., Goldstein, T.C., et al. (2012). Whole-genome analysis informs breast cancer response
to aromatase inhibition. Nature 486, 353-360.
</li>
<li>Garnett, M.J., Edelman, E.J., Heidorn, S.J., Greenman, C.D., Dastur, A., Lau, K.W., Greninger, P.,
Thompson, I.R., Luo, X., Soares, J., et al. (2012). Systematic identification of genomic markers of
drug sensitivity in cancer cells. Nature 483, 570-575.
</li>
<li>Jostins, L., Ripke, S., Weersma, R., Duerr, R., McGovern, D., Hui, K., Lee, J., Schumm, L., Sharma,
Y., Anderson, C., et al. (2012). Host-microbe interactions have shaped the genetic architecture of
inflammatory bowel disease. Nature 491, 119–124.
</li>
<li>Koren, O., Goodrich, J.K., Cullender, T.C., Spor, A., Laitinen, K., Backhed, H.K., Gonzalez, A.,
Werner, J.J., Angenent, L.T., Knight, R., et al. (2012). Host remodeling of the gut microbiome and
metabolic changes during pregnancy. Cell 150, 470-480.
</li>
<li>Lau, E., Kluger, H., Varsano, T., Lee, K., Scheffler, I., Rimm, D.L., Ideker, T., and Ronai, Z.A.
(2012). PKCepsilon promotes oncogenic functions of ATF2 in the nucleus while blocking its apoptotic
function at mitochondria. Cell 148, 543-555.
</li>
<li>Lin, Y.Y., Kiihl, S., Suhail, Y., Liu, S.Y., Chou, Y.H., Kuang, Z., Lu, J.Y., Khor, C.N., Lin, C.L.,
Bader, J.S., et al. (2012). Functional dissection of lysine deacetylases reveals that HDAC1 and p300
regulate AMPK. Nature 482, 251-255.
</li>
<li>Molenaar, J.J., Koster, J., Zwijnenburg, D.A., van Sluis, P., Valentijn, L.J., van der Ploeg, I.,
Hamdi, M., van Nes, J., Westerman, B.A., van Arkel, J., et al. (2012). Sequencing of neuroblastoma
identifies chromothripsis and defects in neuritogenesis genes. Nature 483, 589-593.
</li>
<li>Neph, S., Stergachis, A.B., Reynolds, A., Sandstrom, R., Borenstein, E., and Stamatoyannopoulos,
J.A. (2012). Circuitry and dynamics of human transcription factor regulatory networks. Cell 150,
1274-1286.
</li>
<li>Northcott, P.A., Shih, D.J., Peacock, J., Garzia, L., Morrissy, A.S., Zichner, T., Stutz, A.M.,
Korshunov, A., Reimand, J., Schumacher, S.E., et al. (2012). Subgroup-specific structural variation
across 1,000 medulloblastoma genomes. Nature 488, 49-56.
</li>
<li>O'Roak, B.J., Vives, L., Girirajan, S., Karakoc, E., Krumm, N., Coe, B.P., Levy, R., Ko, A., Lee,
C., Smith, J.D., et al. (2012). Sporadic autism exomes reveal a highly interconnected protein
network of de novo mutations. Nature 485, 246-250.
</li>
<li>Powell, A.E., Wang, Y., Li, Y., Poulin, E.J., Means, A.L., Washington, M.K., Higginbotham, J.N.,
Juchheim, A., Prasad, N., Levy, S.E., et al. (2012). The pan-ErbB negative regulator Lrig1 is an
intestinal stem cell marker that functions as a tumor suppressor. Cell 149, 146-158.
</li>
<li>Shah, S.P., Roth, A., Goya, R., Oloumi, A., Ha, G., Zhao, Y., Turashvili, G., Ding, J., Tse, K.,
Haffari, G., et al. (2012). The clonal and mutational evolution spectrum of primary triple-negative
breast cancers. Nature 486, 395-399.
</li>
</ul>
<h3>2011</h3>
<ul>
<li>Dawson, M.A., Prinjha, R.K., Dittmann, A., Giotopoulos, G., Bantscheff, M., Chan, W.I., Robson,
S.C., Chung, C.W., Hopf, C., Savitski, M.M., et al. (2011). Inhibition of BET recruitment to
chromatin as an effective treatment for MLL-fusion leukaemia. Nature 478, 529-533.
</li>
<li>Edwards, A.M., Isserlin, R., Bader, G.D., Frye, S.V., Willson, T.M., and Yu, F.H. (2011). Too many
roads not taken. Nature 470, 163-165.
</li>
<li>Emanuele, M.J., Elia, A.E., Xu, Q., Thoma, C.R., Izhar, L., Leng, Y., Guo, A., Chen, Y.N., Rush, J.,
Hsu, P.W., et al. (2011). Global identification of modular cullin-RING ligase substrates. Cell 147,
459-474.
</li>
<li>Gieger, C., Radhakrishnan, A., Cvejic, A., Tang, W., Porcu, E., Pistis, G., Serbanovic-Canic, J.,
Elling, U., Goodall, A.H., Labrune, Y., et al. (2011). New gene functions in megakaryopoiesis and
platelet formation. Nature 480, 201-208.
</li>
<li>Green, R.A., Kao, H.L., Audhya, A., Arur, S., Mayers, J.R., Fridolfsson, H.N., Schulman, M.,
Schloissnig, S., Niessen, S., Laband, K., et al. (2011). A high-resolution C. elegans essential gene
network based on phenotypic profiling of a complex tissue. Cell 145, 470-482.
</li>
<li>Guruharsha, K.G., Rual, J.F., Zhai, B., Mintseris, J., Vaidya, P., Vaidya, N., Beekman, C., Wong,
C., Rhee, D.Y., Cenaj, O., et al. (2011). A protein complex network of Drosophila melanogaster. Cell
147, 690-703.
</li>
<li>Ideker, T., Dutkowski, J., and Hood, L. (2011). Boosting signal-to-noise in complex biology: prior
knowledge is power. Cell 144, 860-863.
</li>
<li>Muegge, B.D., Kuczynski, J., Knights, D., Clemente, J.C., Gonzalez, A., Fontana, L., Henrissat, B.,
Knight, R., and Gordon, J.I. (2011). Diet drives convergence in gut microbiome functions across
mammalian phylogeny and within humans. Science 332, 970-974.
</li>
<li>Nichols, R.J., Sen, S., Choo, Y.J., Beltrao, P., Zietek, M., Chaba, R., Lee, S., Kazmierczak, K.M.,
Lee, K.J., Wong, A., et al. (2011). Phenotypic landscape of a bacterial cell. Cell 144, 143-156.
</li>
<li>Paul, P., van den Hoorn, T., Jongsma, M.L., Bakker, M.J., Hengeveld, R., Janssen, L., Cresswell, P.,
Egan, D.A., van Ham, M., Ten Brinke, A., et al. (2011). A Genome-wide multidimensional RNAi screen
reveals pathways controlling MHC class II antigen presentation. Cell 145, 268-283.
</li>
<li>Sang, L., Miller, J.J., Corbit, K.C., Giles, R.H., Brauer, M.J., Otto, E.A., Baye, L.M., Wen, X.,
Scales, S.J., Kwong, M., et al. (2011). Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy
disease genes and pathways. Cell 145, 513-528.
</li>
<li>Seebacher, J., and Gavin, A.C. (2011). SnapShot: Protein-protein interaction networks. Cell 144,
1000, 1000 e1001.
</li>
<li>Su, Z., Huang, W., and Gu, X. (2011). Comment on "Positive selection of tyrosine loss in metazoan
evolution". Science 332, 917; author reply 917.
</li>
</ul>
<h3>2010</h3>
<ul>
<li>Bandyopadhyay, S., Mehta, M., Kuo, D., Sung, M.K., Chuang, R., Jaehnig, E.J., Bodenmiller, B.,
Licon, K., Copeland, W., Shales, M., et al. (2010). Rewiring of genetic networks in response to DNA
damage. Science 330, 1385-1389.
</li>
<li>Behrends, C., Sowa, M.E., Gygi, S.P., and Harper, J.W. (2010). Network organization of the human
autophagy system. Nature 466, 68-76.
</li>
<li>Costanzo, M., Baryshnikova, A., Bellay, J., Kim, Y., Spear, E.D., Sevier, C.S., Ding, H., Koh, J.L.,
Toufighi, K., Mostafavi, S., et al. (2010). The genetic landscape of a cell. Science 327, 425-431.
</li>
<li>Hudson, T.J., Anderson, W., Artez, A., Barker, A.D., Bell, C., Bernabe, R.R., Bhan, M.K., Calvo, F.,
Eerola, I., Gerhard, D.S., et al. (2010). International network of cancer genome projects. Nature
464, 993-998.
</li>
<li>Huttlin, E.L., Jedrychowski, M.P., Elias, J.E., Goswami, T., Rad, R., Beausoleil, S.A., Villen, J.,
Haas, W., Sowa, M.E., and Gygi, S.P. (2010). A tissue-specific atlas of mouse protein
phosphorylation and expression. Cell 143, 1174-1189.
</li>
<li>Kim, J., Lee, J.E., Heynen-Genel, S., Suyama, E., Ono, K., Lee, K., Ideker, T., Aza-Blanc, P., and
Gleeson, J.G. (2010). Functional genomic screen for modulators of ciliogenesis and cilium length.
Nature 464, 1048-1051.
</li>
<li>Konig, R., Stertz, S., Zhou, Y., Inoue, A., Hoffmann, H.H., Bhattacharyya, S., Alamares, J.G.,
Tscherne, D.M., Ortigoza, M.B., Liang, Y., et al. (2010). Human host factors required for influenza
virus replication. Nature 463, 813-817.
</li>
<li>Kumar, D., Nath, L., Kamal, M.A., Varshney, A., Jain, A., Singh, S., and Rao, K.V. (2010).
Genome-wide analysis of the host intracellular network that regulates survival of Mycobacterium
tuberculosis. Cell 140, 731-743.
</li>
<li>Li, X., Gianoulis, T.A., Yip, K.Y., Gerstein, M., and Snyder, M. (2010). Extensive in vivo
metabolite-protein interactions revealed by large-scale systematic analyses. Cell 143, 639-650.
</li>
<li>Moore, M.J., Wang, Q., Kennedy, C.J., and Silver, P.A. (2010). An alternative splicing network links
cell-cycle control to apoptosis. Cell 142, 625-636.
</li>
<li>Pinto, D., Pagnamenta, A.T., Klei, L., Anney, R., Merico, D., Regan, R., Conroy, J., Magalhaes,
T.R., Correia, C., Abrahams, B.S., et al. (2010). Functional impact of global rare copy number
variation in autism spectrum disorders. Nature 466, 368-372.
</li>
<li>Pospisilik, J.A., Schramek, D., Schnidar, H., Cronin, S.J., Nehme, N.T., Zhang, X., Knauf, C., Cani,
P.D., Aumayr, K., Todoric, J., et al. (2010). Drosophila genome-wide obesity screen reveals hedgehog
as a determinant of brown versus white adipose cell fate. Cell 140, 148-160.
</li>
<li>Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K.S., Manichanh, C., Nielsen, T., Pons, N.,
Levenez, F., Yamada, T., et al. (2010). A human gut microbial gene catalogue established by
metagenomic sequencing. Nature 464, 59-65.
</li>
<li>Ravasi, T., Suzuki, H., Cannistraci, C.V., Katayama, S., Bajic, V.B., Tan, K., Akalin, A., Schmeier,
S., Kanamori-Katayama, M., Bertin, N., et al. (2010). An atlas of combinatorial transcriptional
regulation in mouse and man. Cell 140, 744-752.
</li>
<li>van Wageningen, S., Kemmeren, P., Lijnzaad, P., Margaritis, T., Benschop, J.J., de Castro, I.J., van
Leenen, D., Groot Koerkamp, M.J., Ko, C.W., Miles, A.J., et al. (2010). Functional overlap and
regulatory links shape genetic interactions between signaling pathways. Cell 143, 991-1004.
</li>
<li>Zielinska, D.F., Gnad, F., Wisniewski, J.R., and Mann, M. (2010). Precision mapping of an in vivo
N-glycoproteome reveals rigid topological and sequence constraints. Cell 141, 897-907.
</li>
</ul>
<h3>2009</h3>
<ul>
<li>Jackson, P.K. (2009). Navigating the deubiquitinating proteome with a CompPASS. Cell 138, 222-224.
</li>
<li>Jorgensen, C., Sherman, A., Chen, G.I., Pasculescu, A., Poliakov, A., Hsiung, M., Larsen, B.,
Wilkinson, D.G., Linding, R., and Pawson, T. (2009). Cell-specific information processing in
segregating populations of Eph receptor ephrin-expressing cells. Science 326, 1502-1509.
</li>
<li>Keiser, M.J., Setola, V., Irwin, J.J., Laggner, C., Abbas, A.I., Hufeisen, S.J., Jensen, N.H.,
Kuijer, M.B., Matos, R.C., Tran, T.B., et al. (2009). Predicting new molecular targets for known
drugs. Nature 462, 175-181.
</li>
<li>Leidel, S., Pedrioli, P.G., Bucher, T., Brost, R., Costanzo, M., Schmidt, A., Aebersold, R., Boone,
C., Hofmann, K., and Peter, M. (2009). Ubiquitin-related modifier Urm1 acts as a sulphur carrier in
thiolation of eukaryotic transfer RNA. Nature 458, 228-232.
</li>
<li>Mummery-Widmer, J.L., Yamazaki, M., Stoeger, T., Novatchkova, M., Bhalerao, S., Chen, D., Dietzl,
G., Dickson, B.J., and Knoblich, J.A. (2009). Genome-wide analysis of Notch signalling in Drosophila
by transgenic RNAi. Nature 458, 987-992.
</li>
<li>Quigley, D.A., To, M.D., Perez-Losada, J., Pelorosso, F.G., Mao, J.H., Nagase, H., Ginzinger, D.G.,
and Balmain, A. (2009). Genetic architecture of mouse skin inflammation and tumour susceptibility.
Nature 458, 505-508.
</li>
<li>Sowa, M.E., Bennett, E.J., Gygi, S.P., and Harper, J.W. (2009). Defining the human deubiquitinating
enzyme interaction landscape. Cell 138, 389-403.
</li>
<li>Tan, C.S., Pasculescu, A., Lim, W.A., Pawson, T., Bader, G.D., and Linding, R. (2009). Positive
selection of tyrosine loss in metazoan evolution. Science 325, 1686-1688.
</li>
<li>Zhang, E.E., Liu, A.C., Hirota, T., Miraglia, L.J., Welch, G., Pongsawakul, P.Y., Liu, X., Atwood,
A., Huss, J.W., 3rd, Janes, J., et al. (2009). A genome-wide RNAi screen for modifiers of the
circadian clock in human cells. Cell 139, 199-210.
</li>
</ul>
<h3>2008</h3>
<ul>
<li>Ideker, T. (2008). Forging new ties between E. coli genes. Cell 133, 1135-1137.
</li>
<li>Ley, R.E., Hamady, M., Lozupone, C., Turnbaugh, P.J., Ramey, R.R., Bircher, J.S., Schlegel, M.L.,
Tucker, T.A., Schrenzel, M.D., Knight, R., et al. (2008). Evolution of mammals and their gut
microbes. Science 320, 1647-1651.
</li>
<li>Mahrus, S., Trinidad, J.C., Barkan, D.T., Sali, A., Burlingame, A.L., and Wells, J.A. (2008). Global
sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.
Cell 134, 866-876.
</li>
<li>Muller, F.J., Laurent, L.C., Kostka, D., Ulitsky, I., Williams, R., Lu, C., Park, I.H., Rao, M.S.,
Shamir, R., Schwartz, P.H., et al. (2008). Regulatory networks define phenotypic classes of human
stem cell lines. Nature 455, 401-405.
</li>
<li>Roguev, A., Bandyopadhyay, S., Zofall, M., Zhang, K., Fischer, T., Collins, S.R., Qu, H., Shales,
M., Park, H.O., Hayles, J., et al. (2008). Conservation and rewiring of functional modules revealed
by an epistasis map in fission yeast. Science 322, 405-410.
</li>
<li>Yu, H., Braun, P., Yildirim, M.A., Lemmens, I., Venkatesan, K., Sahalie, J., Hirozane-Kishikawa, T.,
Gebreab, F., Li, N., Simonis, N., et al. (2008). High-quality binary protein interaction map of the
yeast interactome network. Science 322, 104-110.
</li>
</ul>
<h3>2006</h3>
<ul>
<li>Alper, H., Moxley, J., Nevoigt, E., Fink, G.R., and Stephanopoulos, G. (2006). Engineering yeast
transcription machinery for improved ethanol tolerance and production. Science 314, 1565-1568.
</li>
<li>Deplancke, B., Mukhopadhyay, A., Ao, W., Elewa, A.M., Grove, C.A., Martinez, N.J., Sequerra, R.,
Doucette-Stamm, L., Reece-Hoyes, J.S., Hope, I.A., et al. (2006). A gene-centered C. elegans
protein-DNA interaction network. Cell 125, 1193-1205.
</li>
<li>Gilchrist, M., Thorsson, V., Li, B., Rust, A.G., Korb, M., Roach, J.C., Kennedy, K., Hai, T.,
Bolouri, H., and Aderem, A. (2006). Systems biology approaches identify ATF3 as a negative regulator
of Toll-like receptor 4. Nature 441, 173-178.
</li>
<li>Krogan, N.J., Cagney, G., Yu, H., Zhong, G., Guo, X., Ignatchenko, A., Li, J., Pu, S., Datta, N.,
Tikuisis, A.P., et al. (2006). Global landscape of protein complexes in the yeast Saccharomyces
cerevisiae. Nature 440, 637-643.
</li>
<li>Pan, X., Ye, P., Yuan, D.S., Wang, X., Bader, J.S., and Boeke, J.D. (2006). A DNA integrity network
in the yeast Saccharomyces cerevisiae. Cell 124, 1069-1081.
</li>
<li>Workman, C.T., Mak, H.C., McCuine, S., Tagne, J.B., Agarwal, M., Ozier, O., Begley, T.J., Samson,
L.D., and Ideker, T. (2006). A systems approach to mapping DNA damage response pathways. Science
312, 1054-1059.
</li>
</ul>
<h3>2004</h3>
<ul>
<li>Hood, L., Heath, J.R., Phelps, M.E., and Lin, B. (2004). Systems biology and new technologies enable
predictive and preventative medicine. Science 306, 640-643.
</li>
<li>Tong, A.H., Lesage, G., Bader, G.D., Ding, H., Xu, H., Xin, X., Young, J., Berriz, G.F., Brost,
R.L., Chang, M., et al. (2004). Global mapping of the yeast genetic interaction network. Science
303, 808-813.
</li>
</ul>
<h3>2002</h3>
<ul>
<li>Ho, Y., Gruhler, A., Heilbut, A., Bader, G.D., Moore, L., Adams, S.L., Millar, A., Taylor, P.,
Bennett, K., Boutilier, K., et al. (2002). Systematic identification of protein complexes in
Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183.
</li>
<li>Tong, A.H., Drees, B., Nardelli, G., Bader, G.D., Brannetti, B., Castagnoli, L., Evangelista, M.,
Ferracuti, S., Nelson, B., Paoluzi, S., et al. (2002). A combined experimental and computational
strategy to define protein interaction networks for peptide recognition modules. Science 295,
321-324.
</li>
</ul>
<h3>2001</h3>
<ul>
<li>Ideker, T., Thorsson, V., Ranish, J.A., Christmas, R., Buhler, J., Eng, J.K., Bumgarner, R.,
Goodlett, D.R., Aebersold, R., and Hood, L. (2001). Integrated genomic and proteomic analyses of a
systematically perturbed metabolic network. Science 292, 929-934.
</li>
<li>Tong, A.H., Evangelista, M., Parsons, A.B., Xu, H., Bader, G.D., Page, N., Robinson, M.,
Raghibizadeh, S., Hogue, C.W., Bussey, H., et al. (2001). Systematic genetic analysis with ordered
arrays of yeast deletion mutants. Science 294, 2364-2368.
</li>
</ul>
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