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Additional transforms #8

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Avsecz opened this issue Oct 9, 2018 · 1 comment

Contributor

Avsecz commented Oct 9, 2018

k-mer or gapped k-mer counter
simple reverse complementation function

transforms/augmentation.py

random sub-sequence augmentation
random reverse-complementation

Avsecz mentioned this issue

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Contributor Author

Avsecz commented Oct 14, 2018

experiment with using Numba to implement k-mer counting or other transforms. Have a fallback method if the user doesn't have numba installed locally

try:
  import numba
  @numba.jit
  def kmers....
except:
  def kmers

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