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Welcome to the SoFiA Image Pipeline wiki!

Troubleshooting

The -m option doesn't produce a combined image.

Try typing which convert. If you have karma/kvis installed (common for viewing HI radio cubes), then it may return:
/usr/local/karma/bin/convert

If this is the case, you need to find where ImageMagick is installed. If you installed with Homebrew the path may be something like:
/usr/local/Cellar/imagemagick/7.1.0-13/bin/convert

To create the combined image, add the correct path after the -m option on the command line.

Minimum requirements for plotting HI contours on an optical image

Source catalog with the following properties:

Naming scheme: <catalog_name>_cat.txt

Catalog contents:

• A commented header similar enough to SoFiA in that the data starts on line 18. (Will work to make this more flexible!)
• The following column names: id, name, ra, dec, x, y, x_min, y_min, x_max, y_max, rms.
  • ra, dec are in decimal degrees
  • x, y is the source center in pixels (float)
  • x(y)_min(max) are the min/max in pixels of the source (int), used to determine if a larger figure should be retrieved for an individ source.

Moment0 FITS file with the following properties:

Naming scheme: _cubelets/_<id>_mom0.fits

FITS header contents (these may be non-standard for mom0 maps, but are required for estimating meaningful column density contours):

• SPECSYS or VELREF to refer to the spectral coord system of the original data
• CTYPE3 to determine the spectral units of the original data