Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update database for new f_biallelic #103

Open
leexgh opened this issue Jan 19, 2021 · 0 comments
Open

Update database for new f_biallelic #103

leexgh opened this issue Jan 19, 2021 · 0 comments

Comments

@leexgh
Copy link
Collaborator

leexgh commented Jan 19, 2021

From signaldb slack channel:

Chai Bandlamudi Jan 16th at 11:05 AM
On biallelic rates for VUS: yes, we can. I update the file on juno with a new column f_biallelic for every variant (in the "signaldb_all_variants_frequencies.txt.gz" file). I also updated the existing f_ballelic column in "signaldb_variants_by_cancertype_summary_statistics.txt.gz" file (there was a minor issue that lead to inflated f_biallelic rates for some variants). the files are in: /juno/work/ccs/bandlamc/shared/signaldb/ .

@leexgh leexgh added this to the Sprint 4 Y2021 milestone Jan 26, 2021
@inodb inodb removed this from the Sprint 4 Y2021 milestone Feb 2, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants