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Gene Page #47

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onursumer opened this issue Apr 21, 2020 · 0 comments
Open
6 tasks done

Gene Page #47

onursumer opened this issue Apr 21, 2020 · 0 comments
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@onursumer
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The Gene page will summarize the aggregated germline and somatic variants across and within cancer types. The page will be geared with interactive features, including:

  • A searchable and sortable table of all germline and somatic variants (linking to the Variant page)
  • Variant annotations from various sources such as ClinVar, OncoKB, and gnomAD
  • A mutation lollipop diagram visualizing all germline and somatic mutations
  • Variant filtering (interacting with the table and lollipop diagram) by different criteria, including cancer type, germline/somatic status, mutation type, and biallelic inactivation
  • The option to select different transcript isoforms for mapping the variants
  • Links to other gene resources, including RefSeq, Ensembl, CCDS, and UniProt.
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