-
Notifications
You must be signed in to change notification settings - Fork 42
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Dockerfile dependency error #101
Comments
Could you tell me what exact version of the container you are using? Did you build your own or pull an image from |
Sorry for not including the full example. It's the labsyspharm/ashlar image from Dockerhub on our computing cluster. I'm not seeing this problem when I run locally, so I will try to identify the problem in the computing environment instead
|
In the docker, pyjnius is looking for libjvm.so in the wrong place.
ashlar 'exemplar-001-cycle-01.ome.tiff' 'exemplar-001-cycle-02.ome.tiff' 'exemplar-001-cycle-03.ome.tiff' -m 30 --ffp exemplar-001-cycle-01-ffp.tif exemplar-001-cycle-02-ffp.tif exemplar-001-cycle-03-ffp.tif --dfp exemplar-001-cycle-01-dfp.tif exemplar-001-cycle-02-dfp.tif exemplar-001-cycle-03-dfp.tif --pyramid -f exemplar-001.ome.tif
As a workaround, I added to the dockerfile
possibly related... kivy/pyjnius#428
The text was updated successfully, but these errors were encountered: