content_config.ini

[input_link]
url = https://www.biorxiv.org/content/10.1101/2023.03.09.531949v1.full

[output_path]
out_path = ./protocols/protocol.csv

[num_keywords]
num_keywords = 4

[sections]
sections_exclude = ["Abstract", "Introduction", "Background", "Result", "Results", "Data", "Analysis",
    "Discussion", "Conclusion", "Supplementary", "Supplemental", "Supplement", "Figure", "Table",
    "References", "Acknowledgement", "Acknowledgment", "Acknowledgments", "Funding",
    "availability", "Conflict", "Competing", "Interest", "Declaration", "Related", "Author",
    "Contribution", "Contributions", "Footnote", "Footnotes", "Additional", "Importance",
    "Associated", "Notes", "Statements", "Statement", "Summary", "Disclosure", "Disclosures",
    "Supporting", "Ethical", "Approval", "Legend", "Legends", "Consent", "Ethics", "Appendix",
    "Rights", "Permission", "Permissions", "About", "Limitation", "Limitations", "Comment", "Comments"]
subsections_exclude = [
    "Analysis", "analyses", "analyse", "Availability", "Assessment", "Assembly", "Calculation",
    "community", "communities", "Criteria", "conclusions", "conclusion", "Culture", "design",
    "Ethics", "Investigation", "Interest", "Limit", "library", "Optimization", "Pipeline",
    "profiles", "profile", "phylogeny", "Review", "Reviews", "record", "records", "Study design",
    "selection", "specimens", "specimen", "Sampling", "Samples", "Sample", "Statement",
    "Standardization", "Western blotting"]
keywords = ["Primer", "PCR", "Cycles", "DNA", "denaturation", "annealing", "thermal cycling", "Thermocycler", "Qiagen", "Promega", "Supermix"]
units = ["min", "minutes", "sec", "seconds", "μL", "ml", "ng", "mb", "µg", "mM", "nM", "µM", "°C"]
protocol_title = ["protocol", "assay", "detection", "PCR", "qPCR", "dPCR", "-PCR", "-qPCR", "-dPCR", "amplification"]