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MD FLAG #137

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clalogiudice opened this issue Mar 23, 2018 · 2 comments
Closed

MD FLAG #137

clalogiudice opened this issue Mar 23, 2018 · 2 comments
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duplicate feature-request

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@clalogiudice
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Hello,
we have noticed that in minimap2 output there is no MD TAG. We need it for using our pacbio alignment output with pysam module.
Is there possibility to implement this feature in minimap2?
There is also the possibility to filter out chimeras?

Thanx in advance,
Claudio
@wdecoster
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The MD flag is optionally added in the GitHub version (but not released yet). See #118 (comment)

@lh3
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lh3 commented Mar 23, 2018

Thanks, @wdecoster. Yes, --MD is available on github master.

@lh3 lh3 closed this as completed Mar 23, 2018
@lh3 lh3 mentioned this issue Apr 2, 2018
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@lh3 @wdecoster @clalogiudice