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About paftools.js asmgene output #581

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fsnibs10 opened this issue Mar 27, 2020 · 1 comment
Closed

About paftools.js asmgene output #581

fsnibs10 opened this issue Mar 27, 2020 · 1 comment
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@fsnibs10
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Hi,

Recently, I want to use paftools.js asmgene to evaluate the gene completeness for assembly.
My command is below:
paftools.js asmgene -e ref-to-cdna.paf cdna.paf > asmgene_e_output.txt

I find one problem. According to issues/355 https://github.com/lh3/minimap2/issues/355 , "part10-" should equal to "below 10% (0)" plus "unmapped (M)".
But for your script, the "unmapped (M)" is added to "part10+".

@lh3 lh3 closed this as completed in 0a5e386 Apr 6, 2020
@lh3
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lh3 commented Apr 6, 2020

Thanks. It is a bug.

@lh3 lh3 added the bug label Apr 6, 2020
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