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Recently, I want to use paftools.js asmgene to evaluate the gene completeness for assembly.
My command is below: paftools.js asmgene -e ref-to-cdna.paf cdna.paf > asmgene_e_output.txt
I find one problem. According to issues/355 https://github.com/lh3/minimap2/issues/355 , "part10-" should equal to "below 10% (0)" plus "unmapped (M)".
But for your script, the "unmapped (M)" is added to "part10+".
The text was updated successfully, but these errors were encountered:
Hi,
Recently, I want to use paftools.js asmgene to evaluate the gene completeness for assembly.
My command is below:
paftools.js asmgene -e ref-to-cdna.paf cdna.paf > asmgene_e_output.txt
I find one problem. According to issues/355 https://github.com/lh3/minimap2/issues/355 , "part10-" should equal to "below 10% (0)" plus "unmapped (M)".
But for your script, the "unmapped (M)" is added to "part10+".
The text was updated successfully, but these errors were encountered: