reedthesis.cls

%
% This file is copyright (C) 2003 Sam Noble. It may be modified so long
% as my name is not removed and the modifier adds his name to the file.
% Redistribution permitted.
%
% 27 Jan 2004	Sam Noble	Removed tocbibind dependency.
% 04 Dec 2001 	Sam Noble	Class file
% 03 Sep 1995	David Perkinson	Title Page
% Acknowledgements Page, David Perkinson & Sam Noble
% May 2005 Patrick Carlisle Table of contents chapter definition
% 2004-2005 Ben Salzberg (BTS) a variety of tweaks here and in the template
% 2015 Chester Ismay (CII) modified to create R Markdown template
%
% Oddities:
%
%   We *ASSUME* that any time \cleardoublepage is called
%  we actually want a blank back side with NO page number/heading
%
%   Minor bug -- seems to be a more general LaTeX thing:
%  If you use \frontmatter \mainmatter without any chapters inbetween
%  be prepared to have the page numbering messed up. Not a big deal,
%  but I'm not sure how to fix it.
%
%

\NeedsTeXFormat{LaTeX2e}
\ProvidesClass{reedthesis}[2004/01/27 The Reed College Thesis Class]
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{book}}
\ProcessOptions\relax
\LoadClass{book}
\RequirePackage{fancyhdr}
% Added by CII to produce nice looking code in BeginVerbatimEnvironment
\RequirePackage{fancyvrb}

% Added by CII
\usepackage{ifxetex,ifluatex}
\usepackage{fontawesome}
\usepackage{fixltx2e} % provides \textsubscript
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
  \usepackage[T1]{fontenc}
  \usepackage[utf8]{inputenc}
\else % if luatex or xelatex
  \ifxetex
    \usepackage{mathspec}
    \usepackage{xltxtra,xunicode}
  \else
    \usepackage{fontspec}
  \fi
  \defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase}
  \newcommand{\euro}{€}
\fi
% use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
% use microtype if available
\IfFileExists{microtype.sty}{%
\usepackage{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
\usepackage{color}
%\newcommand{\VerbBar}{|}
%\newcommand{\VERB}{\Verb[commandchars=\\\{\}]}
\DefineVerbatimEnvironment{verbatim}{Verbatim}{xleftmargin=-1em}
\DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
% Add ',fontsize=\small' for more characters per line
\usepackage{framed}
\definecolor{shadecolor}{RGB}{248,248,248}
% \newenvironment{Shaded}{\begin{snugshade}}{\end{snugshade}}
% \newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{{#1}}}}
% \newcommand{\DataTypeTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{{#1}}}
% \newcommand{\DecValTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{{#1}}}
% \newcommand{\BaseNTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{{#1}}}
% \newcommand{\FloatTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{{#1}}}
% \newcommand{\ConstantTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{{#1}}}
% \newcommand{\CharTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{{#1}}}
% \newcommand{\SpecialCharTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{{#1}}}
% \newcommand{\StringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{{#1}}}
% \newcommand{\VerbatimStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{{#1}}}
% \newcommand{\SpecialStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{{#1}}}
% \newcommand{\ImportTok}[1]{{#1}}
% \newcommand{\CommentTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{{#1}}}}
% \newcommand{\DocumentationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{{#1}}}}}
% \newcommand{\AnnotationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{{#1}}}}}
% \newcommand{\CommentVarTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{{#1}}}}}
% \newcommand{\OtherTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{{#1}}}
% \newcommand{\FunctionTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{{#1}}}
% \newcommand{\VariableTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{{#1}}}
% \newcommand{\ControlFlowTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{{#1}}}}
% \newcommand{\OperatorTok}[1]{\textcolor[rgb]{0.81,0.36,0.00}{\textbf{{#1}}}}
% \newcommand{\BuiltInTok}[1]{{#1}}
% \newcommand{\ExtensionTok}[1]{{#1}}
% \newcommand{\PreprocessorTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{{#1}}}}
% \newcommand{\AttributeTok}[1]{\textcolor[rgb]{0.77,0.63,0.00}{{#1}}}
% \newcommand{\RegionMarkerTok}[1]{{#1}}
% \newcommand{\InformationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{{#1}}}}}
% \newcommand{\WarningTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{{#1}}}}}
% \newcommand{\AlertTok}[1]{\textcolor[rgb]{0.94,0.16,0.16}{{#1}}}
% \newcommand{\ErrorTok}[1]{\textcolor[rgb]{0.64,0.00,0.00}{\textbf{{#1}}}}
% \newcommand{\NormalTok}[1]{{#1}}

\setlength{\emergencystretch}{3em}  % prevent overfull lines
\providecommand{\tightlist}{%
  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
% End of CII add

% This gives us rules below the headers
\AtBeginDocument{%
  \fancyhf{}
  \fancyhead[LE,RO]{\thepage}
%  \fancyhead[RE]{\slshape \leftmark}
%  \fancyhead[LO]{\slshape \rightmark}
%	The above makes your headers in all caps. If you would like different headers, choose one of the following options (be sure to remove the % symbol from both the right and left headers):
	 \fancyhead[RE]{\slshape \nouppercase \leftmark} % This makes the headers on the RIGHT side pages be italic and use lowercase With Capitals When Specified.
	\fancyhead[LO]{\slshape \nouppercase \rightmark} % This does the same thing to the LEFT side pages
%	or
%	\fancyhead[RE]{\scshape \leftmark} % The RIGHT headers will be in small caps.
%	\fancyhead[LO]{\scshape \rightmark} %  And so will the LEFT headers
  \pagestyle{fancy}

% Psych majors: You do not need the following six lines, as it conflicts with apacite, so comment them out.
  \let\oldthebibliography=\thebibliography
  \let\endoldthebibliography=\endthebibliography
  \renewenvironment{thebibliography}[1]{
    \oldthebibliography{#1}
    \addcontentsline{toc}{chapter}{\bibname}
  }{\endoldthebibliography}
 %%%%%% end of things for psych majors to comment out

  \let\oldtheindex=\theindex
  \let\endoldtheindex=\endtheindex
  \renewenvironment{theindex}{
    \oldtheindex
    \addcontentsline{toc}{chapter}{\indexname}
  }{\endoldtheindex}
}

% Stolen from book.cls and modified
\let\RToldchapter\chapter
\renewcommand{\chapter}{\if@openright\RTcleardoublepage
		    \else\clearpage\fi
		    \thispagestyle{empty}%
		    \global\@topnum\z@
		    \@afterindentfalse
		    \secdef\@chapter\@schapter}

% Stolen from book.cls PBC 5/12/05
% Using this to actually show "Chapter 1" in TOC instead of "1"
\def\@chapter[#1]#2{\ifnum \c@secnumdepth >\m@ne
                       \if@mainmatter
                         \refstepcounter{chapter}%
                         \typeout{\@chapapp\space\thechapter.}%
                         \addcontentsline{toc}{chapter}%
                         {\@chapapp\space\thechapter:\space#1}%
                       \else
                         \addcontentsline{toc}{chapter}{#1}%
                       \fi
                    \else
                      \addcontentsline{toc}{chapter}{#1}%
                    \fi
                    \chaptermark{#1}%
                    \addtocontents{lof}{\protect\addvspace{10\p@}}%
                    \addtocontents{lot}{\protect\addvspace{10\p@}}%
                    \if@twocolumn
                      \@topnewpage[\@makechapterhead{#2}]%
                    \else
                      \@makechapterhead{#2}%
                      \@afterheading
                    \fi}

\newcommand{\RTcleardoublepage}{
	\clearpage\if@twoside \ifodd\c@page\else
	\thispagestyle{empty}\hbox{}\newpage
	\if@twocolumn\hbox{}\newpage\fi\fi\fi}

\let\RToldcleardoublepage\cleardoublepage
\renewcommand{\cleardoublepage}{\RTcleardoublepage}

% adjust margins for binding  (changed 2007-04-24 tgp)
\setlength{\oddsidemargin}{0in}
\setlength{\evensidemargin}{0in}
\setlength{\textwidth}{6.5in}
\setlength{\textheight}{9.0in}
\setlength\topmargin{0in}
\addtolength\topmargin{-\headheight}
\addtolength\topmargin{-\headsep}

%\setlength{\oddsidemargin}{0in}
%\setlength{\evensidemargin}{0in}
%\setlength{\textwidth}{6.5in}
%\setlength\topmargin{0in}
%\addtolength\headheight{2.5pt}
%\addtolength\topmargin{-\headheight}
%\addtolength\topmargin{-\headsep}
%\addtolength\textheight{1in}
%\addtolength\textheight{\headheight}
%\addtolength\textheight{\headsep}

\def\degree#1{\gdef \@degree{#1}}
\def\@degree{\@latex@warning@no@line{No \noexpand\degree given}}
\def\institution#1{\gdef \@institution{#1}}
\def\@institution{\@latex@warning@no@line{No \noexpand\institution given}}
\def\division#1{\gdef \@division{#1}}
\def\@division{\@latex@warning@no@line{No \noexpand\division given}}
\def\department#1{\gdef \@department{#1}}
\def\@department{\@latex@warning@no@line{No \noexpand\department given}}
\def\thedivisionof#1{\gdef \@thedivisionof{#1}}
\def\@thedivisionof{The Division of}
\def\approvedforthe#1{\gdef \@approvedforthe{#1}}
\def\@approvedforthe{Division}
\def\advisor#1{\gdef \@advisor{#1}}
\def\@advisor{\@latex@warning@no@line{No \noexpand\advisor given}}
\def\altadvisor#1{\gdef \@altadvisor{#1} \@altadvisortrue}
\global\let\@altadvisor\@empty
\newif\if@altadvisor
\@altadvisorfalse

\renewcommand\l@chapter[2]{%
  \ifnum \c@tocdepth >\m@ne
    \addpenalty{-\@highpenalty}%
    \vskip 1.0em \@plus\p@
    \setlength\@tempdima{1.5em}%
    \begingroup
      \parindent \z@ \rightskip \@pnumwidth
      \parfillskip -\@pnumwidth
      \leavevmode \bfseries
      \advance\leftskip\@tempdima
      \hskip -\leftskip
      #1\nobreak\normalfont
      \leaders\hbox{$\m@th \mkern \@dotsep mu\hbox{.}\mkern \@dotsep mu$}\hfill
      \nobreak\hb@xt@\@pnumwidth{\bfseries \hss #2}\par
      \penalty\@highpenalty
    \endgroup
  \fi}

%%% Added by CII
\newenvironment{acknowledgements}{%
  \if@twocolumn
    \@restonecoltrue\onecolumn
  \else
    \@restonecolfalse
  \fi
  \chapter*{Acknowledgements}
  \fontsize{12}{14}\selectfont
}{\clearpage \if@restonecol\twocolumn\fi}%

\newenvironment{preface}{%
  \if@twocolumn
    \@restonecoltrue\onecolumn
  \else
    \@restonecolfalse
  \fi
  \chapter*{Preface}
  \fontsize{12}{14}\selectfont
}{\clearpage \if@restonecol\twocolumn\fi}%
% End of CII add

\newenvironment{abstract}{%
  \if@twocolumn
    \@restonecoltrue\onecolumn
  \else
    \@restonecolfalse
  \fi
  \chapter*{Abstract}
  \fontsize{12}{14}\selectfont
}{\clearpage \if@restonecol\twocolumn\fi}%

\newenvironment{dedication}{%
  \if@twocolumn
    \@restonecoltrue\onecolumn
  \else
    \@restonecolfalse
  \fi
  \chapter*{List of Acronyms}
  \fontsize{12}{14}\selectfont
}{\clearpage \if@restonecol\twocolumn\fi}%


\ifx\@pdfoutput\@undefined
  \newcommand{\RTpercent}{\@percentchar\space}
  \AtBeginDvi{\special{!\RTpercent Reed College LaTeX Thesis Class 2001/12/04 SN}}
  \AtBeginDvi{\special{rawpostscript \RTpercent Reed College LaTeX Thesis Class 2001/12/04 SN}}
\else
  \AtEndDocument{\pdfinfo{/Creator	(Reed College LaTeX Thesis Class 2001/12/04 SN)}}
\fi

% I hacked the title page to all be the same font size
% as requested by the library, BTS 2005

\renewcommand{\maketitle}{%
  {\pagestyle{empty}
  \fontsize{12}{14}\selectfont
  \begin{titlepage}
  \newpage
  \let\footnotesize\small
  \let\footnoterule\relax
  \let \footnote \thanks

  \baselineskip = 1.4\baselineskip
  \setbox0=\hbox{of the Requirements for the Degree}

  \begin{center}
    \setcounter{page}{1}
    \null\vfil
    {\fontsize{12}{14}\selectfont \bf \LARGE \@title} \par
    {\it Dissertation submitted in partial fulfillment of the requirements} \\
    {\it for the Degree of Master of Science in Geospatial Technologies} \par
    {\bf \@date}
    \
    \centerline{\hbox to \wd0 {\hbox{}\hrulefill\hbox{}}}
    \par
    \par
    {\bf Lucas van der Meer} \\
    {\faEnvelope} \quad luukvandermeer@live.nl \\
    {\faGithub} \quad https://github.com/luukvdmeer \par
    {\bf Supervised by:} \\
    Edzer Pebesma \\
    Institute for Geoinformatics \\
    University of Münster \par
    {\bf Co-supervised by:} \\
    Jorge Mateu \\
    Department of Mathematics \\
    Universidade Jaume I \par
    {\bf Co-supervised by:} \\
    Joel Silva \\
    Information Management School \\
    Universidade Nova de Lisboa \par
    \par
    \par
    \centerline{\hbox to \wd0 {\hbox{}\hrulefill\hbox{}}}
    \vfil
    \includegraphics[width=0.8\textwidth]{figures/logos.png}
  \end{center}\par
  \end{titlepage}

  % \clearpage
  %   \shipout\null
  %   \stepcounter{page}

%% Approved for the division page
  \cleardoublepage
  {\fontsize{12}{12}
  \chapter*{Declaration of Academic Integrity}
  \thispagestyle{empty}
  \null\vfil		% just below center of page
  I hereby confirm that this thesis on \textit{\@title} is solely my own work and that I have used no sources or aids other than the ones stated. \par
  All passages in my thesis for which other sources, including electronic media, have been used, be it direct quotes or content references, have been acknowledged as such and the sources cited.
  \par\vskip 1cm	% below center, not center
  \today
  \centerline{\copy0}	% approved
%%  \centerline{(\@department)} %major
  \vskip 2cm		%space to sign
  \rule{4cm}{0.4pt}
  \par\vskip 2cm
  I agree to have my thesis checked in order to rule out potential similarities with other works and to have my thesis stored in a database for this purpose.
  \par\vskip 1cm	% below center, not center
  \today
  \centerline{\copy0}	% approved
  \vskip 2cm		%space to sign
  \rule{4cm}{0.4pt}
%%  \centerline{\makebox[\wd0][c]{\hrulefill}
%%	\if@altadvisor \makebox[.5in]{} \makebox[\wd0][c]{\hrulefill} \fi}
%%  \centerline{\makebox[\wd0][c]{\@advisor}
%%	\if@altadvisor \makebox[.5in]{} \makebox[\wd0][c]{\@altadvisor} \fi}
  \par\vfil\null}
  % \cleardoublepage
  % \shipout\null
  % \stepcounter{page}
  }
}

% From JSS
% Added by CII
\renewcommand{\title}[1]{\def\@title{#1}}
%\newcommand{\Shorttitle}[1]{\def\@Shorttitle{#1}}
\newcommand{\Plainauthor}[1]{\def\@Plainauthor{#1}}
\newcommand{\Abstract}[1]{\def\@Abstract{#1}}
%\newcommand{\Keywords}[1]{\def\@Keywords{#1}}
%\newcommand{\Plainkeywords}[1]{\def\@Plainkeywords{#1}}
\newcommand{\Acknowledgements}[1]{\def\@Acknowledgements{#1}}
\newcommand{\Dedication}[1]{\def\@Dedication{#1}}
\newcommand{\Preface}[1]{\def\@Preface{#1}}
% End of CII add