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azure-pipelines.yml
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azure-pipelines.yml
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# These jobs are triggered automatically and they test code, examples, and wheels.
# Additional checks can be manually triggered
variables:
nightlyRelease: $[and(eq(variables['nightly_check'], true), eq(variables['Build.SourceBranch'], 'refs/heads/master'), ne(variables['Build.Reason'], 'PullRequest'))]
trigger:
- master
pr:
- master
jobs:
- job: 'manylinux2014'
pool:
vmImage: 'ubuntu-latest'
strategy:
matrix:
Python37:
arch: x86_64
plat: manylinux2014_x86_64
python_ver: '37'
python.version: '3.7'
Python38:
arch: x86_64
plat: manylinux2014_x86_64
python_ver: '38'
python.version: '3.8'
Python39:
arch: x86_64
plat: manylinux2014_x86_64
python_ver: '39'
python.version: '3.9'
Python310:
arch: x86_64
plat: manylinux2014_x86_64
python_ver: '310'
python.version: '3.10'
variables:
CCACHE_DIR: $(Pipeline.Workspace)/ccache
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: '$(python.version)'
- task: Cache@2
inputs:
key: '"ccache-wheels-v2022.8.25" | $(Agent.OS) | "$(python.version)"'
path: $(CCACHE_DIR)
displayName: ccache
- bash: |
set -e
sed -i "s/'giotto-tda'/'giotto-tda-nightly'/1" setup.py
sed -i 's/"giotto-tda"/"giotto-tda-nightly"/1' setup.py
sed -i "s/__version__.*/__version__ = '$(Build.BuildNumber)'/1" gtda/_version.py
condition: eq(variables.nightlyRelease, true)
displayName: 'Change name to giotto-tda-nightly'
- task: Bash@3
inputs:
filePath: .azure-ci/build_manylinux2014.sh
env:
python_ver: $(python_ver)
CCACHE_DIR: $(CCACHE_DIR)
displayName: 'Run docker container, install and uninstall dev environment, test with pytest and flake8, build the wheels'
- script: |
set -e
python -m pip install --upgrade pip
python -m pip install dist/*manylinux2014*.whl
displayName: 'Install the wheels'
- script: |
set -e
python -m pip install pandas pytest pytest-cov pytest-azurepipelines pytest-benchmark hypothesis
# nbformat is needed by plotly: https://github.com/plotly/plotly.py/issues/2159
python -m pip install nbformat
mkdir tmp_test_cov
cd tmp_test_cov
pytest --pyargs gtda --ignore-glob='*externals*' --no-cov --no-coverage-upload
condition: eq(variables['test_wheels'], 'true')
displayName: 'Test the wheels with pytest'
- script: |
set -e
python -m pip install openml matplotlib umap-learn gensim
python -m pip install papermill
cd examples
for n in *.ipynb
do
papermill --start_timeout 2000 $n -
done
condition: eq(variables['test_notebooks'], 'true')
displayName: 'Test jupyter notebooks with papermill'
- task: CopyFiles@2
displayName: 'Copy files'
inputs:
contents: 'dist/*'
targetFolder: '$(Build.ArtifactStagingDirectory)'
- task: PublishBuildArtifacts@1
displayName: 'Create download link'
inputs:
pathToPublish: '$(Build.ArtifactStagingDirectory)'
artifactName: 'wheel'
- bash: |
set -e
python -m pip install twine
twine upload -u giotto-learn -p $(pypi_psw) --skip-existing dist/*manylinux2014*.whl
condition: eq(variables.nightlyRelease, true)
displayName: 'Upload nightly wheels to PyPI'
- job: 'macOS11'
pool:
vmImage: 'macOS-11'
strategy:
matrix:
Python37:
python.version: '3.7'
Python38:
python.version: '3.8'
Python39:
python.version: '3.9'
Python310:
python.version: '3.10'
variables:
CCACHE_DIR: $(Pipeline.Workspace)/ccache
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: '$(python.version)'
- bash: |
set -e
sed -i.bak "s/'giotto-tda'/'giotto-tda-nightly'/1" setup.py
sed -i.bak 's/"giotto-tda"/"giotto-tda-nightly"/1' setup.py
rm setup.py.bak
sed -i.bak "s/__version__.*/__version__ = '$(Build.BuildNumber)'/1" gtda/_version.py
rm gtda/_version.py.bak
condition: eq(variables.nightlyRelease, true)
displayName: 'Change name to giotto-tda-nightly'
- task: Cache@2
inputs:
key: '"ccache-v2022.8.25" | $(Agent.OS) | "$(python.version)"'
path: $(CCACHE_DIR)
displayName: ccache
# Python and gcc hotfixes following https://github.com/actions/virtual-environments/issues/2322 and https://github.com/actions/virtual-environments/issues/2391
- script: |
set -e
brew install boost ccache
displayName: 'Install system dependencies'
- script: |
set -e
python -m pip install --upgrade pip setuptools
python -m pip install wheel
source .azure-ci/setup_ccache.sh
python -m pip install -e ".[dev]"
ccache -s
displayName: 'Install dependencies and dev environment'
- script: |
set -e
pytest gtda --cov --cov-report xml
displayName: 'Test dev install with pytest, upload coverage report'
- script: |
set -e
flake8
displayName: 'Test dev install with flake8'
- script: |
set -e
python -m pip uninstall -y giotto-tda
python -m pip uninstall -y giotto-tda-nightly
displayName: 'Uninstall giotto-tda/giotto-tda-nightly'
# Includes workaround for macOS 11 compatibility issue, see https://github.com/apple/tensorflow_macos/issues/46
- script: |
set -e
python setup.py bdist_wheel
for f in dist/*.whl; do mv "$f" "${f/_11_0_/_10_16_}"; done
displayName: 'Build the wheels'
- script: python -m pip install dist/*.whl
displayName: 'Install the wheels'
- script: |
set -e
mkdir tmp_test_cov
cd tmp_test_cov
pytest --pyargs gtda --ignore-glob='*externals*' --no-cov --no-coverage-upload
condition: eq(variables['test_wheels'], 'true')
displayName: 'Test the wheels with pytest'
- script: |
set -e
python -m pip install -e ".[examples]"
python -m pip install papermill
cd examples
for n in *.ipynb
do
papermill --start_timeout 2000 $n -
done
condition: eq(variables['test_notebooks'], 'true')
displayName: 'Test jupyter notebooks with papermill'
- task: CopyFiles@2
displayName: 'Copy files'
inputs:
contents: 'dist/*'
targetFolder: '$(Build.ArtifactStagingDirectory)'
- script: |
set -e
python -m pip install twine
twine check dist/*
displayName: 'Check distribution with twine'
- task: PublishBuildArtifacts@1
displayName: 'Create download link'
inputs:
pathToPublish: '$(Build.ArtifactStagingDirectory)'
artifactName: 'wheel'
- bash: |
set -e
twine upload -u giotto-learn -p $(pypi_psw) --skip-existing dist/*
condition: eq(variables.nightlyRelease, true)
displayName: 'Upload nightly wheels to PyPI'
- job: 'windows'
pool:
vmImage: 'windows-latest'
strategy:
matrix:
Python37:
python_ver: '37'
python.version: '3.7'
Python38:
python_ver: '38'
python.version: '3.8'
Python39:
python.version: '3.9'
Python310:
python.version: '3.10'
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: '$(python.version)'
- bash: |
set -e
sed -i "s/'giotto-tda'/'giotto-tda-nightly'/1" setup.py
sed -i 's/"giotto-tda"/"giotto-tda-nightly"/1' setup.py
sed -i "s/__version__.*/__version__ = '$(Build.BuildNumber)'/1" gtda/_version.py
condition: eq(variables.nightlyRelease, true)
displayName: 'Change name to giotto-tda-nightly'
# Use the boost_1_72_0-msvc-14.1-64.exe for windows-latest
# Following issue https://github.com/actions/virtual-environments/issues/2667
# As of March 2021, it is necessary to download Boost manually
# DIR: installation dir, this value need to be forwarded to BOOST_ROOT_PIPELINE
- powershell: |
$Url = "https://sourceforge.net/projects/boost/files/boost-binaries/1.72.0/boost_1_72_0-msvc-14.2-64.exe"
(New-Object System.Net.WebClient).DownloadFile($Url, "$env:TEMP\boost.exe")
Start-Process -Wait -FilePath "$env:TEMP\boost.exe" "/SILENT","/SP-","/SUPPRESSMSGBOXES","/DIR=C:\hostedtoolcache\windows\Boost\1.72.0\x86_64"
displayName: 'Install boost'
# Set BOOST_ROOT_PIPELINE to the version used in the pipeline
# See https://github.com/actions/virtual-environments/issues/687#issuecomment-616345933
- script: |
echo "##vso[task.setvariable variable=BOOST_ROOT_PIPELINE]C:\hostedtoolcache\windows\Boost\1.72.0\x86_64"
displayName: 'Set env variable for boost version'
- script: |
python -m pip install --upgrade pip setuptools
python -m pip install wheel
python -m pip install -e ".[dev]"
displayName: 'Install dev environment'
- script: |
pytest gtda --no-cov --no-coverage-upload || exit /b
displayName: 'Test dev install with pytest'
- script: |
python -m pip uninstall -y giotto-tda
python -m pip uninstall -y giotto-tda-nightly
displayName: 'Uninstall giotto-tda/giotto-tda-nightly'
- bash: |
set -e
sed -i $'s/\r$//' README.rst
python setup.py bdist_wheel
displayName: 'Build the wheels'
- bash: python -m pip install dist/*.whl
displayName: 'Install the wheels'
- script: |
mkdir tmp_test_cov
cd tmp_test_cov
pytest --pyargs gtda --ignore-glob='*externals*' --no-cov --no-coverage-upload
condition: eq(variables['test_wheels'], 'true')
displayName: 'Test the wheels with pytest'
- script: |
python -m pip install -e ".[examples]"
python -m pip install papermill
cd examples
FOR %%n in (*.ipynb) DO (papermill --start_timeout 2000 %%n - || exit /b)
condition: eq(variables['test_notebooks'], 'true')
displayName: 'Test jupyter notebooks with papermill'
- task: CopyFiles@2
displayName: 'Copy files'
inputs:
contents: 'dist/*'
targetFolder: '$(Build.ArtifactStagingDirectory)'
- task: PublishBuildArtifacts@1
displayName: 'Create download link'
inputs:
pathToPublish: '$(Build.ArtifactStagingDirectory)'
artifactName: 'wheel'
- bash: |
set -e
python -m pip install twine
twine upload -u giotto-learn -p $(pypi_psw) --skip-existing dist/*
condition: eq(variables.nightlyRelease, true)
displayName: 'Upload nightly wheels to PyPI'