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Releases: m3g/mdanalysis

17.102

12 Apr 19:03
@m3g m3g
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  • Changed version file to 17.102
  • fixed wrong upload of gss-base.sh

17.100.2

10 Apr 20:46
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  • Changed version file to 17.100.2
  • changed default values of dbulk and cutoff in gss
  • restored gss.f90 to that of version 17.060

17.100

10 Apr 20:41
@m3g m3g
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  • Changed version file to 17.100

-- This release is to be ignored. It is the last tag before returning gss.f90 to version 17.060

  • determines the number of frames by reading file in align.f90
  • computing kb from 1/rhobulk()
  • changed kb computation to int phi-1 dV
  • indented histogram program
  • changed nint to nintegral, fixed maxatom, irad for ibin, put rnd molecule in atom 1 position instead of cm, added domaindensity calculation, prints gss behavior at long distances, compute kb explicitly by formula
  • changed some output number formats
  • small ahestetic fix in output
  • improved printing of progress

17.065

06 Mar 18:04
@m3g m3g
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  • Changed version file to 17.065
  • returned example binstep to 0.02
  • removed cutoff and uses dbulk for everything
  • computes the bulk volume from indirect count of molecules outside cutoff
  • fixed typo in release.sh file

17.060

01 Mar 14:23
@m3g m3g
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  • Changed version file to 17.060
  • removed gmd, gss_maxmin, and gssfree, which not relevant anymore with the new gss
  • fixed calculation of phi_atom_contribution
  • added computation and printing of gss distributions and gss contributions per atom
  • several code cleanups and picks only bulk molecules for random distribution
  • moved printing of density averages
  • changed normalization at the end by 1/rho_bulk and computation of density_fix
  • fixed allocation of ysort in data_average
  • moved scaling by density fix to end
  • added skip in kb if random count is zero
  • new simplified normalization for gss
  • fixed bug in min/max setting in histogram
  • prints atom kbs in gss
  • simplification of some calculations in gss
  • improved Makefile
  • various changes in gmd and ahestetic fix in gss
  • fixes in gmd, perhaps done. needs testing
  • gmd compiles, to be tested
  • added gmd module (which will probably substitute gss later)

17.057

27 Feb 12:28
@m3g m3g
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  • Changed version file to 17.057
  • fixed reinsertion of solute coordinates in xyz vectors after reallocation
  • fixed initialization of random number in gss
  • added median as last column of data_average
  • fixed counting of atomic gss contributions
  • changed gamma per atom to 1. at short distances
  • updated input file of gss
  • implemented computation of phi

17.034

03 Feb 09:46
@m3g m3g
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  • Changed version file to 17.034
  • fixed second call to smalldistances in gss, regression introduced on last commit
  • improved comments of smalldistances routine for new memory management
  • better memory management in smalldistances
  • added standard error to data_average, and computes average only for data within interpolated region for each set
  • fixed printing progress to file
  • improved out of screen output
  • added onscreenprogress option to gss
  • fixed typo
  • omitting details of data files if too many files

17.020

20 Jan 17:31
@m3g m3g
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  • fixed order of gss_atom printing
  • Changed version file to 17.020
  • fixed output of kbint with lineformat
  • updated input file of gss with gssperatom
  • implemented report of peratom contributions to gss
  • added number reformating on output of gss for kbint and kbintsphere

17.018

18 Jan 15:36
@m3g m3g
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  • Changed version file to 17.018
  • added error message for if cutoff > axis/2
  • removed explicit declaration of dimensions of size maxsmalld
  • updated input file of gss to new version, and default value of nint
  • fixed output of kbintsphere
  • fixed legend of output and output of shellvolume
  • finished reimplementing the random solvent generation, but it overestimates the the partial volume of the solute.
  • changed default dbulk and cutoff
  • added nint input option to gss
  • fixing bug in smalld counting for random points
  • changed input file and gss output
  • changing normalization in gss
  • added dshift to gss output
  • removed kb-vol from output
  • added writting to getnframes
  • fixed format output in gss
  • changed title int output of gss
  • changed names of final variables, for clarity
  • fixed scalelast normalizaton
  • fixed typo
  • fixed bug in shellvolume, add converstion of kbint to cc/mol
  • added kb-vol column to gss output
  • added computation of KB integrals, work in progress
  • changed gss and gss_random to real, and removed unused variables
  • computation of standard gr in gss fixed
  • fixed normalization for sphere volume in gss
  • fixed rescaling of normalization of gssrnd
  • scales gssrnd by final error, and report error
  • ahestetic change in gss output
  • fixed output in gss
  • added computation of KB integral in GSS
  • prettier description for release in homepage

17.004

04 Jan 12:37
@m3g m3g
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  • Changed version file to 17.004
  • removed various warnings
  • simplified scropt to link to changelog
  • added change log to release.sh