Releases: m3g/mdanalysis
Releases · m3g/mdanalysis
17.102
17.100.2
17.100
- Changed version file to 17.100
-- This release is to be ignored. It is the last tag before returning gss.f90 to version 17.060
- determines the number of frames by reading file in align.f90
- computing kb from 1/rhobulk()
- changed kb computation to int phi-1 dV
- indented histogram program
- changed nint to nintegral, fixed maxatom, irad for ibin, put rnd molecule in atom 1 position instead of cm, added domaindensity calculation, prints gss behavior at long distances, compute kb explicitly by formula
- changed some output number formats
- small ahestetic fix in output
- improved printing of progress
17.065
17.060
- Changed version file to 17.060
- removed gmd, gss_maxmin, and gssfree, which not relevant anymore with the new gss
- fixed calculation of phi_atom_contribution
- added computation and printing of gss distributions and gss contributions per atom
- several code cleanups and picks only bulk molecules for random distribution
- moved printing of density averages
- changed normalization at the end by 1/rho_bulk and computation of density_fix
- fixed allocation of ysort in data_average
- moved scaling by density fix to end
- added skip in kb if random count is zero
- new simplified normalization for gss
- fixed bug in min/max setting in histogram
- prints atom kbs in gss
- simplification of some calculations in gss
- improved Makefile
- various changes in gmd and ahestetic fix in gss
- fixes in gmd, perhaps done. needs testing
- gmd compiles, to be tested
- added gmd module (which will probably substitute gss later)
17.057
- Changed version file to 17.057
- fixed reinsertion of solute coordinates in xyz vectors after reallocation
- fixed initialization of random number in gss
- added median as last column of data_average
- fixed counting of atomic gss contributions
- changed gamma per atom to 1. at short distances
- updated input file of gss
- implemented computation of phi
17.034
- Changed version file to 17.034
- fixed second call to smalldistances in gss, regression introduced on last commit
- improved comments of smalldistances routine for new memory management
- better memory management in smalldistances
- added standard error to data_average, and computes average only for data within interpolated region for each set
- fixed printing progress to file
- improved out of screen output
- added onscreenprogress option to gss
- fixed typo
- omitting details of data files if too many files
17.020
- fixed order of gss_atom printing
- Changed version file to 17.020
- fixed output of kbint with lineformat
- updated input file of gss with gssperatom
- implemented report of peratom contributions to gss
- added number reformating on output of gss for kbint and kbintsphere
17.018
- Changed version file to 17.018
- added error message for if cutoff > axis/2
- removed explicit declaration of dimensions of size maxsmalld
- updated input file of gss to new version, and default value of nint
- fixed output of kbintsphere
- fixed legend of output and output of shellvolume
- finished reimplementing the random solvent generation, but it overestimates the the partial volume of the solute.
- changed default dbulk and cutoff
- added nint input option to gss
- fixing bug in smalld counting for random points
- changed input file and gss output
- changing normalization in gss
- added dshift to gss output
- removed kb-vol from output
- added writting to getnframes
- fixed format output in gss
- changed title int output of gss
- changed names of final variables, for clarity
- fixed scalelast normalizaton
- fixed typo
- fixed bug in shellvolume, add converstion of kbint to cc/mol
- added kb-vol column to gss output
- added computation of KB integrals, work in progress
- changed gss and gss_random to real, and removed unused variables
- computation of standard gr in gss fixed
- fixed normalization for sphere volume in gss
- fixed rescaling of normalization of gssrnd
- scales gssrnd by final error, and report error
- ahestetic change in gss output
- fixed output in gss
- added computation of KB integral in GSS
- prettier description for release in homepage