.gitignore

!data/sources.txt
notebooks/.ipynb_checkpoints
.DS_Store
/.idea
.idea/shelf
/confluence/target
/dependencies/repo
/android.tests.dependencies
/dependencies/android.tests.dependencies
/dist
/local
/gh-pages
/ideaSDK
/clionSDK
/android-studio/sdk
out/
/tmp
workspace.xml
*.versionsBackup
/idea/testData/debugger/tinyApp/classes*
/jps-plugin/testData/kannotator
/js/js.translator/testData/out/
/js/js.translator/testData/out-min/
/js/js.translator/testData/out-pir/
.gradle/
build/
!**/src/**/build
!**/test/**/build
*.iml
!**/testData/**/*.iml
.idea/libraries/Gradle*.xml
.idea/libraries/Maven*.xml
.idea/artifacts/PILL_*.xml
.idea/artifacts/KotlinPlugin.xml
.idea/modules
.idea/runConfigurations/JPS_*.xml
.idea/runConfigurations/PILL_*.xml
.idea/libraries
.idea/modules.xml
.idea/gradle.xml
.idea/compiler.xml
.idea/inspectionProfiles/profiles_settings.xml
.idea/.name
.idea/artifacts/dist_auto_*
.idea/artifacts/dist.xml
.idea/artifacts/ideaPlugin.xml
.idea/artifacts/kotlinc.xml
.idea/artifacts/kotlin_compiler_jar.xml
.idea/artifacts/kotlin_plugin_jar.xml
.idea/artifacts/kotlin_jps_plugin_jar.xml
.idea/artifacts/kotlin_daemon_client_jar.xml
.idea/artifacts/kotlin_imports_dumper_compiler_plugin_jar.xml
.idea/artifacts/kotlin_main_kts_jar.xml
.idea/artifacts/kotlin_compiler_client_embeddable_jar.xml
.idea/artifacts/kotlin_reflect_jar.xml
.idea/jarRepositories.xml
kotlin-ultimate/
node_modules/
.rpt2_cache/
libraries/tools/kotlin-test-js-runner/lib/
libraries/tools/kotlin-source-map-loader/lib/
local.properties
/.idea/$CACHE_FILE$
/.idea/kotlinc.xml
/.idea/misc.xml
/.idea/rSettings.xml
/.idea/vcs.xml

/.idea/other.xml
/.idea/rGraphicsSettings.xml
/.idea/rpackages.xml
LoadEggNogResults-checkpoint.ipynb

## R extensions
.Rhistory
.Rapp.history
.RData
.Ruserdata
*-Ex.R
/*.tar.gz
/*.Rcheck/
.Rproj.user/
vignettes/*.html
vignettes/*.pdf
.httr-oauth
*_cache/
/cache/
*.utf8.md
*.knit.md
.Renviron
*.Rproj
kotlinScripting.xml
uiDesigner.xml
/kegg.cache.json
/.idea
lets-plot-images
documentation_resources/raw_tutorials/.ipynb_checkpoints
src/test/kotlin/biokotlin/kmer/KmerDemo.kt
b73.gff
src/test/resources/biokotlin/featureTree/dotOutput