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Edit me to practice contributing to a collaborative Manubot manuscript
+
+
+test edit - hello world. This manuscript
+(permalink )
+was automatically generated
+from manubot/try-manubot@b26ff4a
+on February 21, 2024.
+
+Authors
+
+
+
✉ — Correspondence possible via GitHub Issues
+or email to
+Jane Roe <jane.roe@whatever.edu>.
+
Abstract
+Manubot is an open source tool for writing manuscripts on GitHub in markdown format.
+Manubot applies the git-based software workflow to scholarly writing, enabling enhanced transparency, collaboration, automation, and reproducibility.
+This manuscript is a Manubot demo, intended to give users a playground to practice using Manubot.
+Everyone is encouraged to try writing with Manubot by editing this manuscript.
+Manubot is described in the paper titled “Open collaborative writing with Manubot” [1 ] .
+Test my understanding
+Just a paper [2 ]
+Manubot is not described in [3 ] .
+Manubot is described in the paper titled “Open collaborative writing with Manubot” [1 ] .
+Okay
+Ok attempting to do this in the correct order. test.
+Test the workflow of manubot and its citation rule [4 ]
+Main text
+Lorem ipsum text [5 ] is a strong introduction for any manuscript.
+Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
+Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur.
+Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
+Manubot makes it easy to cite this manuscript [6 ] .
+It has been used to write several manuscripts that are now preprints on bioRxiv [7 ,8 ,9 ,10 ] .
+Notice that only [9 ] has the correct name of the preprint server.
+Manubot allows authors to overwrite reference information, in this case with a BibTeX file.
+Lorem ipsum also makes a strong conclusion [11 ] here is another reference to see if duplicate references are picked up by the program if the second author uses a different identifier for the same reference like here with the immediately preceding reference [12 ] . Did it work?
+Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
+Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur.
+Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
+I’m wondering about how editing this file works within the web browser.
+Testing inserting a reference Note that some buffers can potentially introduce modifications onto proteins such as carbamylation from urea at high temperatures [13 ,14 ] .
+Trying with references again [15 ]
+The objectives of the action plan for each sector are as follows:
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+
+Agriculture SO 1: Recuperate and restore the fertility of degraded land
+
+
+SO 2: Improve access for farmers to high quality agricultural production factors (equipment, inputs, land, results of agricultural research etc.)
+
+
+SO 3: Improve the resilience of stakeholders to climate change}
+
+
+SO 4: Develop early warning systems to ensure efficient management of climate variability and change
+
+
+Animal production SO 1: Improve the security of pastoral activities through better dissemination and exploitation of information on pastoral resources and associated access
+
+
+SO 2: Ensure the security of animal capital with a view to supporting the pastoral economy on a sustainable basis and improve the resilience of stakeholders in order to achieve sustainable food security in Burkina Faso
+
+
+SO 3: Reduce the vulnerability of farmers to climate change and contribute to local economic development
+
+
+Environment and natural resources SO 1: Increase productivity and the resilience of ecosystems
+
+
+SO 2: Improve biodiversity conservation
+
+
+SO 3: Improve research and ecological monitoring
+
+
+SO 4: Reduce GG emissions
+
+
+Energy SO 1: Reduce the impact of climate change on the energy sector
+
+
+SO 2: Ensure a sustainable supply of energy for cooking
+
+
+SO 3: Reduce electricity consumption
+
+
+SO 4: Gain more knowledge into the impact of climate change on the energy sector
+
+
+Health SO 1: Ensure leadership and governance in terms of adapting to the impacts of climate change on the health sector
+
+
+SO 2: Increase human resources in the health sector skilled in adapting to the effects of climate change
+
+
+SO 3: Improve the early warning system and the response to climate change-related phenomena
+
+
+SO 4: Adapt health infrastructure to the effects of climate change
+
+
+SO 5: Improve research in the field of climate change
+
+
+Infrastructure and housing OS 1: Promote access to decent accommodation for disadvantaged social groups by providing rental accommodation, supporting DIY construction and building social housing stock
+
+
+SO 2: Provide public facilities and road, water and rain and waste-water drainage infrastructure which is practical and resilient through good design/implementation and good maintenance
+
+
+OS 3:Turn the towns of Burkina Faso into hubs of economic growth and sustainable development by promoting a green economy
+
+
+Horizontal issues SO 1: Help to improve mastery of environmental problems and climate change by members of women's associations
+
+
+SO 2: Help to improve the resilience of members of women's associations by implementing revenue-generating activities
+
+
+SO 3: Develop adaptation technologies which take account of the conditions in women's associations on the basis of traditional knowledge
+
+
+SO 4: Improve the contribution of NGOs to better governance in implementing the NAP/CC in Burkina Faso
+
+
+SO 5: Ensure the sustainability of civil society initiatives in climate change adaptation
+
+
+SO 6: Help to improve public involvement in the process of reflection, analysis and decision-making in connection with climate change adaptation by producing, disseminating and making efficient use of information originating from innovative CSO experiences.
+
+
+SO 7:Improve the mobilisation and exploitation of water resources* *
+
+
+SO 8: Improve conservation and protection of water resources
+
+
+SO 9: Improve knowledge about (surface and, more importantly, underground) water resources in the context of climate change
+
+
+SO 10: Improve access to sanitation
+
+
+
+The global NAP for the country as a whole can be summarised as follows:
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+Agriculture
+- Cultivate early varieties or drought-resistant crops (Short) - Apply water and soil conservation methods (stone barriers, small dikes, filtering dikes, terraces, half moons, agroforestry, dune fixing etc.) (Short) - Promote sustainable land management (SLM) (Medium) - Improve access to climate information (Medium) - Introduce agricultural insurance (Long)
+
+
+Livestock farming
+- Fight bush fires in order to prevent destruction [16 ] of dry-season grazing reserves- Adopt best animal husbandry and pastoral practices (pastoral hydraulics, pastoral resource management, pasture mowing and conservation, pasture crops, silage, animal mobility and transhumance etc.) - Ensure stakeholders take account of climate variability in development project and programme planning by improving their skills - Preserve cattle breeding at serious risk from climate variability - Ensure farmers adopt animal production methods adapted to a hot climate
+
+
+
+I wonder what happens if I do hto
+Great Idea!
+Testing some identifier types [17 ] and [18 ] and [19 ]
+References
+
+
+
+
1.
Open collaborative writing with Manubot Daniel S Himmelstein, Vincent Rubinetti, David R Slochower, Dongbo Hu, Venkat S Malladi, Casey S Greene, Anthony Gitter
Manubot (2020-05-25)
https://greenelab.github.io/meta-review/
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+
+
2.
Proteogenomics connects somatic mutations to signalling in breast cancer Philipp Mertins, DR Mani, Kelly V Ruggles, Michael A Gillette, Karl R Clauser, Pei Wang, Xianlong Wang, Jana W Qiao, Song Cao, Francesca Petralia, … Steven A Carr
Nature (2016-06)
https://www.nature.com/articles/nature18003
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+
7.
GimmeMotifs: an analysis framework for transcription factor motif analysis Niklas Bruse, Simon J van Heeringen
Cold Spring Harbor Laboratory (2018-11-20)
https://doi.org/gfxrkc
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+
+
8.
Plasmids for independently tunable, low-noise expression of two genes João PN Silva, Soraia Vidigal Lopes, Diogo J Grilo, Zach Hensel
Cold Spring Harbor Laboratory (2019-01-09)
https://doi.org/gfs47c
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+
10.
Genotyping structural variants in pangenome graphs using the vg toolkit Glenn Hickey, David Heller, Jean Monlong, Jonas A Sibbesen, Jouni Sirén, Jordan Eizenga, Eric T Dawson, Erik Garrison, Adam M Novak, Benedict Paten
Cold Spring Harbor Laboratory (2019-06-01)
https://doi.org/gf3jfm
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+
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+
12.
Hypothermic machine perfusion in kidney transplantation Julie De Deken, Peri Kocabayoglu, Cyril Moers
Current Opinion in Organ Transplantation (2016-06)
https://doi.org/f8mswg
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+
+
13.
Inhibition of protein carbamylation in urea solution using ammonium-containing buffers Shisheng Sun, Jian-Ying Zhou, Weiming Yang, Hui Zhang
Analytical Biochemistry (2014-02)
https://doi.org/f5pjdg
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+
14.
Pandora box of BCA assay. Investigation of the accuracy and linearity of the microplate bicinchoninic protein assay: Analytical challenges and method modifications to minimize systematic errors Eduard Rogatsky
Analytical Biochemistry (2021-10)
https://doi.org/gpvbj4
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+
+
15.
Inhibition of protein carbamylation in urea solution using ammonium-containing buffers. Shisheng Sun, Jian-Ying Zhou, Weiming Yang, Hui Zhang
Analytical biochemistry (2013-10-23)
https://www.ncbi.nlm.nih.gov/pubmed/24161613
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