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setup.py
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setup.py
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from setuptools import find_packages, setup
__version__ = "0.0.1"
# Load README
with open("README.md", encoding="utf-8") as f:
long_description = f.read()
setup(
name="catpred",
author="Veda Sheersh Boorla, Costas D. Maranas",
author_email="mailforveda@gmail.com",
description="A comprehensive framework for deep learning in vitro enzyme kinetic parameters kcat, Km and Ki",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/maranasgroup/catpred",
download_url=f"https://github.com/maranasgroup/catpred/v_{__version__}.tar.gz",
project_urls={
"Documentation": "https://github.com/maranasgroup/catpred/",
"Source": "https://github.com/maranasgroup/catpred",
"PyPi": "",
"Demo": "https://tiny.cc/catpred",
},
license="MIT",
packages=find_packages(),
package_data={"catpred": ["py.typed"]},
entry_points={
"console_scripts": [
"catpred_train=catpred.train:catpred_train",
"catpred_predict=catpred.train:catpred_predict",
]
},
install_requires=[
"matplotlib>=3.1.3",
"numpy>=1.18.1",
"pandas>=1.0.3",
"pandas-flavor>=0.2.0",
"scikit-learn>=0.22.2.post1",
"tensorboardX>=2.0",
"sphinx>=3.1.2",
"torch>=1.4.0",
"tqdm>=4.45.0",
"typed-argument-parser>=1.6.1",
"rdkit>=2020.03.1.0",
"scipy<1.11 ; python_version=='3.7'",
"scipy>=1.9 ; python_version=='3.8'",
],
python_requires=">=3.7",
classifiers=[
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
],
keywords=[
"bioinformatics",
"machine learning",
"enzyme function prediction",
"message passing neural network",
],
)