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Error of 4-processONT #268

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YouxinZhao opened this issue Jul 9, 2024 · 6 comments
Closed

Error of 4-processONT #268

YouxinZhao opened this issue Jul 9, 2024 · 6 comments

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@YouxinZhao
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I am using R10 ONT data corrected with dorado（SUP）herro model to assemble the genome.
Two jobs all stopped for error of 4-processONT.

ont_resolved_graph.gfa.err
image
@YouxinZhao
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Verkko V2.1

@YouxinZhao
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ont_resolved_graph.gfa.err:
https://github.com/marbl/verkko/assets/95477328/abe7e101-ebab-4f2f-a419-4d6a531af523

@maickrau
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maickrau commented Jul 9, 2024

Could you share the following files:

4-processONT/normal-connected.gfa
4-processONT/fake-ont-nodecovs.csv
4-processONT/fake-ont-alns.gaf

@YouxinZhao
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The files were uploaded.
https://figshare.com/articles/dataset/Verkko_error/26308852

@maickrau
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Commit 7248729 in master branch should fix this bug

@skoren
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skoren commented Aug 21, 2024

I presume this is fixed? It should be part of the next release which should be available in the next couple of weeks.

@skoren skoren closed this as completed Aug 21, 2024
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@skoren @maickrau @YouxinZhao