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mazfayaz/gromacsSaftGen
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Description : - This is a tool to generator gromacs input files using the SAFT-gamma Mie forcefield. - The input files contain all information except the angle and torsion potentials, so add accordingly. Requirements: - Python - GROMACS/4.5.5 (if you want to change this to 5.1 or later version let me know, we could collaborate!) To run: 1. Edit the file input.sh - quite self explanatory, if not talk to me 2. If molecule doesnt exist in db.csv or parameters are wrong, add the molecule to the db. - make sure no first-third letter combination molecular names are repeated: e.g. gromacs would fail if you want to simulate Carbon and Coronene and name molecules the same way instead you could do Ca1rbon and Co2ronene 2. type "bash input.sh" - output would be Simul-hr-min-second
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This is a tool to generate GROMACS input files using the SAFT-gamma Mie forcefield. The input files contain all information except the angle and torsion potentials, so add accordingly.
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