From 7b4255238f36d9bc7f5bf1e835b57caace375c1a Mon Sep 17 00:00:00 2001
From: danellecline <dcline@mbari.org>
Date: Thu, 19 Sep 2024 16:56:35 -0700
Subject: [PATCH] fix: minor fix to correct iclisten coverage plot

---
 pbp/meta_gen/gen_iclisten.py | 4 ++--
 pbp/meta_gen/gen_nrs.py      | 2 +-
 pbp/meta_gen/utils.py        | 2 ++
 3 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/pbp/meta_gen/gen_iclisten.py b/pbp/meta_gen/gen_iclisten.py
index 0935357..6b9730c 100644
--- a/pbp/meta_gen/gen_iclisten.py
+++ b/pbp/meta_gen/gen_iclisten.py
@@ -70,9 +70,9 @@ def run(self):
             return
 
         # Run for each day in the range
+        self.df = None
         for day in pd.date_range(self.start, self.end, freq="D"):
             try:
-                self.df = None
                 for s in self.prefixes:
                     self.log.info(
                         f"{self.log_prefix} Searching in {self.audio_loc}/*.wav "
@@ -181,7 +181,7 @@ def run(self):
                 self.log.exception(str(ex))
 
         # plot the daily coverage only on files that are greater than the start date
-        # this os tp avoid plotting any coverage on files only included for overlap
+        # this is to avoid plotting any coverage on files only included for overlap
         plot_file = plot_daily_coverage(
             InstrumentType.ICLISTEN,
             self.df[self.df["start"] >= self.start],
diff --git a/pbp/meta_gen/gen_nrs.py b/pbp/meta_gen/gen_nrs.py
index 98c318d..31c6c4b 100644
--- a/pbp/meta_gen/gen_nrs.py
+++ b/pbp/meta_gen/gen_nrs.py
@@ -156,7 +156,7 @@ def run(self):
                 self.log.exception(str(ex))
 
         # plot the daily coverage only on files that are greater than the start date
-        # this os tp avoid plotting any coverage on files only included for overlap
+        # this is to avoid plotting any coverage on files only included for overlap
         plot_file = plot_daily_coverage(
             InstrumentType.NRS,
             self.df[self.df["start"] >= self.start],
diff --git a/pbp/meta_gen/utils.py b/pbp/meta_gen/utils.py
index 20ab86e..97bd1b2 100644
--- a/pbp/meta_gen/utils.py
+++ b/pbp/meta_gen/utils.py
@@ -126,6 +126,8 @@ def plot_daily_coverage(
     daily_sum_df["coverage"] = daily_sum_df[
         "coverage"
     ].round()  # round to nearest integer
+    # Cap the coverage at 100%
+    daily_sum_df["coverage"] = daily_sum_df["coverage"].clip(upper=100)
     if len(daily_sum_df) == 1:
         # Add a row with a NaN coverage before and after the single day to avoid matplotlib
         # warnings about automatically expanding the x-axis