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conda-env.yaml
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conda-env.yaml
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name: DetectSeq
channels:
- defaults
- conda-forge
- bioconda
- r
- microsoft
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aioeasywebdav=2.4.0=py39hf3d152e_1001
- aiohttp=3.8.1=py39h7f8727e_1
- aiosignal=1.2.0=pyhd3eb1b0_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyhd3eb1b0_0
- asttokens=2.0.5=pyhd3eb1b0_0
- async-timeout=4.0.1=pyhd3eb1b0_0
- asynctest=0.13.0=py_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=21.4.0=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- bcrypt=3.2.0=py39he8ac12f_0
- bedtools=2.30.0=h468198e_3
- biopython=1.78=py39h7f8727e_0
- bismark=0.23.1=hdfd78af_0
- blas=1.0=openblas
- blosc=1.21.0=h4ff587b_1
- boto3=1.24.28=py39h06a4308_0
- botocore=1.27.28=py39h06a4308_0
- bottleneck=1.3.5=py39h7deecbd_0
- bowtie=1.3.1=py39hd400a0c_2
- bowtie2=2.4.5=py39hd2f7db1_2
- brotlipy=0.7.0=py39h27cfd23_1003
- bwa=0.7.17=h7132678_9
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- ca-certificates=2022.07.19=h06a4308_0
- cachetools=4.2.2=pyhd3eb1b0_0
- certifi=2022.6.15=py39h06a4308_0
- cffi=1.15.0=py39hd667e15_1
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- coin-or-cbc=2.10.8=h3786ebc_0
- coin-or-cgl=0.60.6=h6f57e76_1
- coin-or-clp=1.17.7=hc56784d_1
- coin-or-osi=0.108.7=h2720bb7_1
- coin-or-utils=2.11.6=h202d8b1_1
- coincbc=2.10.8=0_metapackage
- colorama=0.4.5=py39h06a4308_0
- commonmark=0.9.1=pyhd3eb1b0_0
- configargparse=1.4=pyhd3eb1b0_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=37.0.1=py39h9ce1e76_0
- cutadapt=4.1=py39hbf8eff0_0
- dataclasses=0.8=pyh6d0b6a4_7
- datrie=0.8.2=py39h27cfd23_0
- dbus=1.13.18=hb2f20db_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- dnaio=0.9.0=py39hbf8eff0_0
- docutils=0.18.1=py39h06a4308_3
- dpath=2.0.6=py39hf3d152e_1
- dropbox=11.14.0=py39h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.4.4=h295c915_0
- fastqc=0.11.9=hdfd78af_1
- filechunkio=1.8=py_2
- filelock=3.6.0=pyhd3eb1b0_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- fontconfig=2.13.1=h6c09931_0
- freetype=2.11.0=h70c0345_0
- frozenlist=1.2.0=py39h7f8727e_0
- ftputil=5.0.4=pyhd8ed1ab_0
- future=0.18.2=py39h06a4308_1
- gitdb=4.0.7=pyhd3eb1b0_0
- gitpython=3.1.18=pyhd3eb1b0_1
- glib=2.69.1=h4ff587b_1
- google-api-core=2.8.2=pyhd8ed1ab_0
- google-api-python-client=2.54.0=pyhd8ed1ab_0
- google-auth=2.6.0=pyhd3eb1b0_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.2.2=pyhd3eb1b0_0
- google-cloud-storage=1.43.0=py39h06a4308_0
- google-crc32c=1.1.2=py39h27cfd23_0
- google-resumable-media=1.3.1=pyhd3eb1b0_1
- googleapis-common-protos=1.56.4=py39hf3d152e_0
- grpcio=1.42.0=py39hce63b2e_0
- hdf5=1.12.1=h70be1eb_2
- hisat2=2.2.1=h87f3376_4
- htslib=1.15.1=h9753748_0
- httplib2=0.20.4=pyhd8ed1ab_0
- icu=58.2=he6710b0_3
- idna=3.3=pyhd3eb1b0_0
- importlib-metadata=4.11.3=py39h06a4308_0
- importlib_metadata=4.11.3=hd3eb1b0_0
- importlib_resources=5.2.0=pyhd3eb1b0_1
- iniconfig=1.1.1=pyhd3eb1b0_0
- ipython=8.4.0=py39h06a4308_0
- isa-l=2.30.0=ha770c72_4
- jedi=0.18.1=py39h06a4308_1
- jinja2=3.0.3=pyhd3eb1b0_0
- jmespath=0.10.0=pyhd3eb1b0_0
- jsonschema=4.4.0=py39h06a4308_0
- jupyter_core=4.10.0=py39h06a4308_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.38=h1181459_1
- ldc=1.28.1=hcf88599_0
- libblas=3.9.0=15_linux64_openblas
- libcblas=3.9.0=15_linux64_openblas
- libcrc32c=1.1.1=he6710b0_2
- libcurl=7.83.1=h7bff187_0
- libdeflate=1.10=h7f98852_0
- libedit=3.1.20210910=h7f8727e_0
- libev=4.33=h7f8727e_1
- libffi=3.3=he6710b0_2
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=12.1.0=h8d9b700_16
- liblapack=3.9.0=15_linux64_openblas
- liblapacke=3.9.0=15_linux64_openblas
- libllvm12=12.0.1=hf817b99_2
- libnghttp2=1.47.0=h727a467_0
- libopenblas=0.3.20=h043d6bf_1
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.20.1=h4ff587b_0
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-ng=12.1.0=ha89aaad_16
- libuuid=1.0.3=h7f8727e_2
- libxcb=1.15=h7f8727e_0
- libxml2=2.9.14=h74e7548_0
- libzlib=1.2.12=h166bdaf_2
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h295c915_1
- lzo=2.10=h7b6447c_2
- markupsafe=2.1.1=py39h7f8727e_0
- matplotlib-inline=0.1.2=pyhd3eb1b0_2
- mock=4.0.3=pyhd3eb1b0_0
- multidict=5.2.0=py39h7f8727e_2
- nbformat=5.3.0=py39h06a4308_0
- ncurses=6.3=h5eee18b_3
- numexpr=2.8.3=py39hd2a5715_0
- numpy=1.22.3=py39h7a5d4dd_0
- numpy-base=1.22.3=py39hb8be1f0_0
- oauth2client=4.1.3=py_0
- openjdk=11.0.13=h87a67e3_0
- openssl=1.1.1q=h7f8727e_0
- packaging=21.3=pyhd3eb1b0_0
- pandas=1.4.3=py39h6a678d5_0
- paramiko=2.8.1=pyhd3eb1b0_0
- parso=0.8.3=pyhd3eb1b0_0
- patsy=0.5.2=py39h06a4308_1
- pbzip2=1.1.13=0
- pcre=8.45=h295c915_0
- peppy=0.32.0=pyhd8ed1ab_1
- perl=5.26.2=h14c3975_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pigz=2.6=h27cfd23_0
- pip=22.1.2=py39h06a4308_0
- plac=1.3.4=pyhd3eb1b0_0
- pluggy=1.0.0=py39h06a4308_1
- ply=3.11=py39h06a4308_0
- prettytable=3.3.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- protobuf=3.20.1=py39h295c915_0
- psutil=5.9.0=py39h5eee18b_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pulp=2.6.0=py39hf3d152e_1
- pure_eval=0.2.2=pyhd3eb1b0_0
- py=1.11.0=pyhd3eb1b0_0
- pyasn1=0.4.8=pyhd3eb1b0_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pygments=2.11.2=pyhd3eb1b0_0
- pynacl=1.4.0=py39he8ac12f_1
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyrsistent=0.18.0=py39heee7806_0
- pysam=0.18.0=py39h5030a8b_2
- pysamstats=1.1.2=py39h87d955d_9
- pysftp=0.2.9=pyhd3eb1b0_1
- pysocks=1.7.1=py39h06a4308_0
- pytables=3.7.0=py39h9da3b7f_0
- pytest=7.1.2=py39h06a4308_0
- python=3.9.12=h12debd9_1
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.15.1=pyhd3eb1b0_0
- python-irodsclient=1.1.4=pyhd8ed1ab_0
- python-isal=0.11.1=py39h3811e60_1
- python_abi=3.9=2_cp39
- pytz=2022.1=py39h06a4308_0
- pyyaml=6.0=py39h7f8727e_1
- ratelimiter=1.2.0=py_1002
- readline=8.1.2=h7f8727e_1
- requests=2.28.1=py39h06a4308_0
- retry=0.9.2=py_0
- rich=10.16.2=pyhd3eb1b0_0
- rsa=4.7.2=pyhd3eb1b0_1
- s3transfer=0.6.0=py39h06a4308_0
- sambamba=0.8.2=h98b6b92_2
- samclip=0.4.0=hdfd78af_1
- samtools=1.15.1=h1170115_0
- scipy=1.8.1=py39h8ba3f38_2
- setuptools=61.2.0=py39h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- slacker=0.14.0=py_0
- smart_open=5.2.1=py39h06a4308_0
- smmap=4.0.0=pyhd3eb1b0_0
- snakemake=7.9.0=hdfd78af_0
- snakemake-minimal=7.9.0=pyhdfd78af_0
- sqlite=3.38.5=hc218d9a_0
- stack_data=0.2.0=pyhd3eb1b0_0
- statsmodels=0.13.2=py39h7f8727e_0
- stone=3.2.1=pyhd3eb1b0_0
- stopit=1.1.2=py_0
- tabulate=0.8.10=py39h06a4308_0
- tbb=2020.3=hfd86e86_0
- tk=8.6.12=h1ccaba5_0
- tomli=2.0.1=py39h06a4308_0
- toposort=1.7=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd3eb1b0_0
- typing-extensions=4.1.1=hd3eb1b0_0
- typing_extensions=4.1.1=pyh06a4308_0
- tzdata=2022a=hda174b7_0
- ubiquerg=0.6.2=pyhd8ed1ab_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.9=py39h06a4308_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- wrapt=1.14.1=py39h5eee18b_0
- xopen=1.5.0=py39hf3d152e_0
- xz=5.2.5=h7f8727e_1
- yaml=0.2.5=h7b6447c_0
- yarl=1.6.3=py39h27cfd23_0
- yte=1.5.1=py39hf3d152e_0
- zipp=3.8.0=py39h06a4308_0
- zlib=1.2.12=h7f8727e_2
- zstd=1.5.2=ha4553b6_0
prefix: /home/menghw/miniconda3/envs/DetectSeq