DESCRIPTION

Package: miaDemo
Title: Package Demo: mia
Version: 2.0.11
Authors@R: 
    c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")),
      person(given = "Leo", family = "Lahti", role = c("aut"),
             email = "leo.lahti@iki.fi",
             comment = c(ORCID = "0000-0001-5537-637X")))
Description: miaverse – microbiome analysis framework within the SummarizedExperiment ecosystem
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.0
Depends:
    R (>= 4.5.0),
    Biobase
Suggests:
    ALDEx2,
    ANCOMBC,
    ape,
    biclust,
    BiocBook,
    BiocManager,
    BiocParallel,
    Biostrings,
    bluster,
    caret,
    circlize,
    cluster,
    cobiclust,
    ComplexHeatmap,
    corpcor,
    cowplot,
    curatedMetagenomicData,
    dada2,
    dendextend,
    devtools,
    DirichletMultinomial,
    dplyr,
    DT,
    factoextra,
    fido,
    forcats,
    ggplot2,
    ggpubr,
    ggtree,
    glmnet,
    glue,
    grid,
    gsEasy,
    gtools,
    igraph,
    IntegratedLearner,
    knitr,
    Maaslin2,
    mia,
    miaTime,
    miaViz,
    microbiome,
    microbiomeDataSets,
    MicrobiomeStat,
    mikropml,
    MMUPHin,
    MOFA2,
    multiview,
    NbClust,
    NetCoMi,
    NMF,
    patchwork,
    phyloseq,
    plotly,
    plotROC,
    purrr,
    qgraph,
    RColorBrewer,
    rebook,
    reshape2,
    reticulate,
    rgl,
    scales,
    scater,
    scuttle,
    sechm,
    sessioninfo,
    shadowtext,
    SpiecEasi,
    SPRING,
    stats,
    stringr,
    SuperLearner,
    tidyverse,
    topGO,
    vegan,
    WGCNA,
    xgboost
Remotes:
    github::microbiome/mia,
    github::microbiome/miaViz,
    github::microbiome/miaTime,
    github::joey711/phyloseq,
    github::stefpeschel/NetCoMi,
    github::zdk123/SpiecEasi,
    github::GraceYoon/SPRING,
    github::himelmallick/IntegratedLearner
URL: https://microbiome.github.io/miaDemo/
BugReports: https://github.com/microbiome/miaDemo/issues/
VignetteBuilder: knitr
DockerImage: ghcr.io/microbiome/miaDemo:latest