-
Notifications
You must be signed in to change notification settings - Fork 46
/
TutorialsResources.Rmd
41 lines (21 loc) · 2.34 KB
/
TutorialsResources.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
---
title: "Tutorials and Educational Resources"
output: html_document
---
Below are resources useful for microbiome sequencing specifically 16S rRNA gene-based studies.
**NOTE**:
1. The resources mentioned here are in no way comprehensive and if you know any articles/resources highlight it on the [GitHub repo](https://github.com/microsud/Tools-Microbiome-Analysis/issues).
2. Some may be outdated but these can be re-purposed with some effort if you really need to do some specific analysis.
*Did you recently publish an article with reproducible code rendered as a website? Then contact us and we can highlight it on this website!*
1. Lahti L, Shetty SA, Ernst F (2021) [Orchestrating Microbiome Analysis](https://microbiome.github.io/OMA/)
2. Shetty SA, Lahti L, Hermes Gerben DA, & Smidt H. (2018, September 27). [Microbial bioinformatics introductory course material](https://mibwurrepo.github.io/Microbial-bioinformatics-introductory-course-Material-2018/introduction.html). Zenodo. http://doi.org/10.5281/zenodo.1436630.
3. Nabiilah Ardini Fauziyyah [Microbiome Analysis using microbiome in R](https://rpubs.com/nabiilahardini/microbiome)
4. Schmidt, Ruth. [How to give life to your microbiome data](https://towardsdatascience.com/how-to-give-life-to-your-microbiome-data-using-plotly-r-1892281183cf)
5. Schloss Pat. [Riffomonas Project YouTube Channel](https://www.youtube.com/channel/UCGuktEl5InrcxPfCjmPWxsA)
6. Bisanz, Jordan E. [Analyzing and Visualizing Microbiome Data in R](https://jbisanz.github.io/MicrobiomeWorkshop2020/rvis/index.html)
7. Luna, Pamela N. [Microbiome Joint Model Tutorial](https://pamelanluna.github.io/mbjm-tutorial/)
8. Svetlana UP. [A-microbiologist-wants-to-compute](https://github.com/SvetlanaUP/A-microbiologist-wants-to-compute)
9. Svetlana UP. [Microbiome-etc-Podcasts](https://github.com/SvetlanaUP/Microbiome-etc-Podcasts)
10. Svetlana UP. [Microbiome-conferences-etc](https://github.com/SvetlanaUP/Microbiome-conferences-c)
11. Hannah Freund. [Amplicon Analysis Workflow](https://hlfreund.github.io/workflows.github.io/amplicon_workflow.html)
12. Tully, B. J. et al. [The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment. Frontiers in Education (2021).](https://www.frontiersin.org/articles/10.3389/feduc.2021.711618/full)