diff --git a/README.md b/README.md index 2fc9671..cf2cb36 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,9 @@ favapy -n The number of interactions in the output file (with both directions, proteinA-proteinB and proteinB-proteinA). Default value = 100000. --c The cut-off on the Pearson Correlation scores.The scores can range from 1 (high correlation) to -1 (high anti-correlation). This option overwrites the number of interactions. Default value = None. +-cor Type of correlation method ('pearson' or 'spearman'). Default value = 'pearson' + +-c The cut-off on the Correlation scores.The scores can range from 1 (high correlation) to -1 (high anti-correlation). This option overwrites the number of interactions. Default value = None. -d The dimensions of the intermediate\hidden layer. Default value depends on the input size. @@ -50,6 +52,7 @@ favapy -b The batch size. Default value = 32. + ``` If FAVA is useful for your research, consider citing [FAVA BiorXiv](https://doi.org/10.1101/2022.07.06.499022).