The Islet Regulome Browser

Description

The Islet Regulome Browser is a dynamic website that allows you to explore genetic and epigenetic data from islet-related cell-types and tissues.

This repository contains the app that can be found at http://isletregulome.com. It uses the shiny R package to create the user interface, recieve user queries and return the output. The main IRB plot is drawn using the plotRegulome package.

Pre-requisites

You need to have installed the following packages:

• CRAN
  • shiny
  • shinycssloaders
  • shinyjs
  • shinythemes
  • markdown
  • DT
  • formattable
• Bioconductor
  • GenomicRanges
• Github
  • plotRegulome

In the R console (R version >= 3.5.0) type the following to install the requiered packages:

install.packages(c("shiny",
                   "shinycssloaders",
                   "shinyjs"
                   "shinythemes",
                   "DT",
                   "formttable",
                   "BiocManager", # Required for installing Bioconductor packages
                   "devtools" # Required for installing github packages
                   )) 

BiocManager::install("GenomicRanges")

devtools::install_github("mireia-bioinfo/plotRegulome")