mf6.yml

name: FloPy Modflow6 continuous integration

on:
  schedule:
    - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST)
  push:
  pull_request:
    branches:
      - master
      - develop

jobs:

  test:
    name: Modflow6 FloPy tests
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
    defaults:
      run:
        shell: bash
    steps:

    - name: Checkout flopy repo
      uses: actions/checkout@v4

    - name: Setup Python
      uses: actions/setup-python@v5
      with:
        python-version: 3.9
        cache: 'pip'
        cache-dependency-path: pyproject.toml

    - name: Install Python dependencies
      run: |
        pip install --upgrade pip
        pip install https://github.com/modflowpy/pymake/zipball/master
        pip install https://github.com/Deltares/xmipy/zipball/develop
        pip install https://github.com/MODFLOW-USGS/modflowapi/zipball/develop
        pip install .[test,optional]

    - name: Setup GNU Fortran
      uses: fortran-lang/setup-fortran@v1
      with:
        compiler: gcc
        version: 13

    - name: Checkout MODFLOW 6
      uses: actions/checkout@v4
      with:
        repository: MODFLOW-USGS/modflow6
        path: modflow6

    - name: Update flopy MODFLOW 6 classes
      working-directory: modflow6/autotest
      run: |
        python update_flopy.py

    - name: Install meson
      run: |
        pip3 install meson ninja

    - name: Setup modflow
      working-directory: modflow6
      run: |
        meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin

    - name: Build modflow
      working-directory: modflow6
      run: |
        meson compile -C builddir

    - name: Install modflow
      working-directory: modflow6
      run: |
        meson install -C builddir

    - name: Get executables
      working-directory: modflow6/autotest
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        pytest -v --durations=0 get_exes.py

    - name: Run tests
      working-directory: modflow6/autotest
      run: |
        pytest -v --cov=flopy --cov-report=xml --durations=0 -n auto -m "not repo and not regression"

    - name: Print coverage report before upload
      working-directory: ./modflow6/autotest
      run: |
        coverage report

    - name: Upload coverage to Codecov
      if:
        github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request')
      uses: codecov/codecov-action@v3
      with:
        files: ./modflow6/autotest/coverage.xml