Change to allow wrapper to use a feature

[KyleLamoureux]

CRISPRStudio/CRISPR_Studio_1.0.py

Lines 777 to 782 in a0c243d

	correctedFasta = input('\n\tPlease enter the name of the corrected fasta file: ')
	if len(correctedFasta) > 1:
	spacerDict, isolateList, averageLength, crArrayList = readCorrectedFasta(correctedFasta)
	else:
	spacerDict, isolateList, averageLength, crArrayList = spacerExtract(inFile)
	writeFasta(spacerDict, outFasta)

This needs to be changed to a command line argument as it doesn't function when the tool is wrapped up. This is because when CRISPR Studio is run on galaxy there is no way to take user input once run execute is clicked.