build.gradle

/*
 * This file was generated by the Gradle 'init' task.
 */

plugins {
    id "java"
    id "org.sonarqube" version "4.4.1.3373"
    id 'maven-publish'
    id 'com.github.johnrengelman.shadow' version '8.1.1'
    id 'application'
    id 'com.palantir.docker' version '0.35.0'
}

ext {
    javaMainClass = "org.molgenis.emx2.RunMolgenisEmx2"
    javaVersion = JavaVersion.VERSION_17
}

allprojects {
    if(rootProject.nyxState.releaseScope.previousVersion == rootProject.version) {
        version = rootProject.nyxState.releaseScope.previousVersion + "-SNAPSHOT"
    }
    else {
        version = rootProject.version.replace("SNAPSHOT.1","SNAPSHOT")
    }
}
println "Corrected version checking for optional snapshot: " + rootProject.version

nyxPublish.dependsOn assemble

sonarqube {
    properties {
        property 'sonar.projectName', 'molgenis-emx2'
        property 'sonar.projectKey', 'molgenis_molgenis-emx2'
        property 'sonar.coverage.jacoco.xmlReportPaths', "${projectDir}/backend/build/reports/jacoco/jacocoMergedReport/jacocoMergedReport.xml"
    }
}

tasks.withType(Test) {
    maxParallelForks = Runtime.runtime.availableProcessors() / 2;
}

repositories {
    mavenLocal()
    mavenCentral()
}

dependencies {
    implementation project(':backend:molgenis-emx2-run')
}

mainClassName = 'org.molgenis.emx2.RunMolgenisEmx2'
shadowJar {
    zip64 = true
    archiveBaseName = 'molgenis-emx2'
    mergeServiceFiles()
    archiveVersion = project.version.replace("v","")
}

publishing {
    repositories {
        maven {
            // change to point to repo later
            url = "$buildDir/repo"
        }
    }
}

project.ext.ghToken = project.hasProperty('ghToken') ? project.getProperty('ghToken') : System.getenv('GITHUB_TOKEN') ?: null

def imageName = 'docker.io/molgenis/molgenis-emx2'
def tagName = project.version.toString().replace("v","")
if (version.toString().endsWith('-SNAPSHOT')) {
    ext.hash = 'git rev-parse --short HEAD'.execute().text.trim()
    imageName = "docker.io/molgenis/molgenis-emx2-snapshot"
    tagName = "${project.version.toString().replace("v","")}-${ext.hash}"
}
// write a file to pickup in deployment to use specific tags in upgrade
task ci(type: WriteProperties) {
    outputFile file('build/ci.properties')
    property 'TAG_NAME', tagName
    property 'FILE_NAME', shadowJar.archiveFile.get().asFile.name
}

docker {
    name imageName
    tags tagName, 'latest'
    files shadowJar.archiveFile.get()
    buildArgs(['JAR_FILE': shadowJar.archiveFile.get().asFile.name])
}
tasks.dockerPrepare.dependsOn(shadowJar)

String getGitHash() {
    // git hash
    def command = Runtime.getRuntime().exec("git rev-parse --short HEAD")
    def result = command.waitFor()
    if (result != 0) {
        throw new IOException("Command 'getGitHash()' exited with " + result)
    }

    String gitCommitHash = command.inputStream.text.trim()

    return gitCommitHash
}

application {
    mainClass.set(javaMainClass)
}

jar {
    reproducibleFileOrder = true
    manifest {
        attributes(
                'Specification-Version': project.version.toString(),
                'Implementation-Version': getGitHash(),
                'Created-By': "Gradle ${gradle.gradleVersion}",
                'Build-Jdk': "${System.properties['java.version']} (${System.properties['java.vendor']} ${System.properties['java.vm.version']})",
                'Build-OS': "${System.properties['os.name']} ${System.properties['os.arch']} ${System.properties['os.version']}"
        )
    }
}

//task to install pre-commit hook that applies formatting
task installPreCommitGitFormatApplyHook(type: Copy) {
    from new File(rootProject.rootDir, 'pre-commit-format-apply')
    rename 'pre-commit-format-apply', 'pre-commit'
    into { new File(rootProject.rootDir, '.git/hooks') }
    fileMode 0775
}