From 1dd5be0800af6c0dc4db2aa90c9cabe6acf51cfe Mon Sep 17 00:00:00 2001 From: "bart.charbon" Date: Fri, 13 Dec 2024 14:46:33 +0100 Subject: [PATCH] Update report-vcf version + fix tests --- package.json | 4 ++-- pnpm-lock.yaml | 10 +++++----- src/__tests__/trio.vcf | 5 +++-- 3 files changed, 10 insertions(+), 9 deletions(-) diff --git a/package.json b/package.json index 799a4f5..4123f0b 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@molgenis/vip-report-api", - "version": "6.2.1", + "version": "6.2.2", "description": "TypeScript Report API for Variant Call Format (VCF) Report Templates", "scripts": { "build": "tsc --build", @@ -49,7 +49,7 @@ "vitest": "^2.1.5" }, "dependencies": { - "@molgenis/vip-report-vcf": "^3.0.8" + "@molgenis/vip-report-vcf": "^3.1.0" }, "engines": { "node": "22", diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml index ae0137b..9569069 100644 --- a/pnpm-lock.yaml +++ b/pnpm-lock.yaml @@ -9,8 +9,8 @@ importers: .: dependencies: '@molgenis/vip-report-vcf': - specifier: ^3.0.8 - version: 3.0.8 + specifier: ^3.1.0 + version: 3.1.0 devDependencies: '@eslint/js': specifier: ^9.15.0 @@ -284,8 +284,8 @@ packages: '@jridgewell/trace-mapping@0.3.25': resolution: {integrity: sha512-vNk6aEwybGtawWmy/PzwnGDOjCkLWSD2wqvjGGAgOAwCGWySYXfYoxt00IJkTF+8Lb57DwOb3Aa0o9CApepiYQ==} - '@molgenis/vip-report-vcf@3.0.8': - resolution: {integrity: sha512-Y8RyYccPbUG34cm+CjrCJb22Hies+8fX+0WDkuudm0iWXzMRpw0YMri6hPnmX4PGKtHppm3wFYqYvdRBPUyIGA==} + '@molgenis/vip-report-vcf@3.1.0': + resolution: {integrity: sha512-z/UC8eJBYo/fUwlzYDTBiOpACBmoC9UqWeW5YW/9+V1gw6Dni2ysMdh8T0ANJPkqmik57iar2PK0BO6X3O1SWA==} engines: {node: '22', pnpm: '9'} '@nodelib/fs.scandir@2.1.5': @@ -1326,7 +1326,7 @@ snapshots: '@jridgewell/resolve-uri': 3.1.2 '@jridgewell/sourcemap-codec': 1.5.0 - '@molgenis/vip-report-vcf@3.0.8': {} + '@molgenis/vip-report-vcf@3.1.0': {} '@nodelib/fs.scandir@2.1.5': dependencies: diff --git a/src/__tests__/trio.vcf b/src/__tests__/trio.vcf index bd26229..9d8a283 100644 --- a/src/__tests__/trio.vcf +++ b/src/__tests__/trio.vcf @@ -14,7 +14,8 @@ ##FORMAT= ##FORMAT= ##FORMAT= +##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Patient Mother Father -1 10042538 . C T 80 PASS n_array0=c,,d,b;n_number2=1;n_object0=dummy5|c|1&2,dummy7||1&2,dummy1|d|1&2,dummy4|b|1&2;n_string0=a;n_string3=b;n_string4=b GT:DP:AD 1|0:50:45,5 0|0:10:10,0 0|0:10:10,0 -1 16376412 . G A . . n_array0=b,c,a;n_array1=a,b;n_bool3;n_bool6;n_bool7;n_number2=0;n_object0=dummy3|b|1&2&3,dummy2|c|1&2&3,dummy6|a|;n_string0=a;n_string3=a;n_string4=A GT:DP:AD 0|1:10:0,0 1|0:11:11,0 1|0:11:11,0 +1 10042538 . C T 80 PASS n_array0=c,,d,b;n_number2=1;n_object0=dummy5|c|1&2,dummy7||1&2,dummy1|d|1&2,dummy4|b|1&2;n_string0=a;n_string3=b;n_string4=b GT:DP:AD:VIAB 1|0:50:45,5:0.9 0|0:10:10,0:1 0|0:10:10,0:1 +1 16376412 . G A . . n_array0=b,c,a;n_array1=a,b;n_bool3;n_bool6;n_bool7;n_number2=0;n_object0=dummy3|b|1&2&3,dummy2|c|1&2&3,dummy6|a|;n_string0=a;n_string3=a;n_string4=A GT:DP:VIAB:AD 0|1:10:.:0,0 1|0:11:1:11,0 1|0:11:1:11,0