_pkgdown.yml

destination: docs


template:
  params:
    bootswatch: flatly

reference:
  - title: "Running the model"
    desc: "Running squire models and calibrating them"
    contents:
      - run_explicit_SEEIR_model
      - run_simple_SEEIR_model
      - calibrate
      - projections
  - title: "Parameters"
    desc: "Model parameters and retrieving country demography, healthcare and mixing matrices"
    contents:
      - parameters_explicit_SEEIR
      - parameters_simple_SEEIR
      - get_population
      - get_mixing_matrix
      - get_lmic_countries
      - get_healthcare_capacity
  - title: "Beta estimation"
    desc: "Functions for estimating beta for a given R0"
    contents:
      - beta_est_explicit
      - beta_est
  - title: "Model output summaries"
    desc: "Functions for summarising the model components and plotting"
    contents:
      - projection_plotting
      - format_output
      - format_output_simple_model

navbar:
  type: default
  left:
    - href: index.html
      icon: fa-home
    - text: Parameters
      href: articles/parameters.html
    - text: Reference
      href: reference/index.html
    - text: News
      href: news/index.html
  right:
    - icon: fa-github
      href: https://github.com/mrc-ide/squire