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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file. The format is based on Keep a Changelog and this project versioning is based on Semantic Versioning.

[1.0.1] - 2022-05-11

Added

  • Enabled blip-up & blip-down fieldmap EPI (dir-AP_epi & dir-PA_epi)
  • Internal: added dir to OBOSeries

[1.0.0] - 2018-08-10

Added

  • Optional scans.tsv file (containing relative path, scan date and time for all scans within a subject/session) can be optionally created
  • Limited error handling: when dcm2niix exits with non-zero code (fails to convert dicoms for whatever reason), report this in a log file and move on to the next series
  • When the plugin is unable to properly rename a field map file, also report this in a log file and move on to the next series

Fixed

  • Position of buttons added in 0.5.0 is now properly adjusted when the window is resized
  • Files with _e2_ph suffix added by dcm2niix (field map phasediff file) are now handled properly (prior to April 2018, dcm2niix versions added only _e2)

[0.5.0] - 2018-06-10

Added

  • General mapping (sequence name to BIDS meaning) can be stored in json files and reused
  • Mapping summary (which dicom series was exported to which file) is automatically saved in a csv file

Changed

  • Dicom files are symlinked rather than copied (thanks @malywladek for the suggestion)
  • Bold and fmap jsons have keys sorted alphabetically for better readability (only available on MacOS 10.13 and later, so on older systems the keys will not be sorted)
  • Mapping table scales with the window
  • A different widget (ComboBox) is used for choosing BIDS suffix. It's scrollable, with most common options at the top
  • Build target changed to MacOS 10.12

Fixed

  • General mapping window is more closely tied to its data structure. As a result, labels shouldn't swap places any more when there are so many sequences that the table becomes scrollable.

[0.4.1] - 2018-03-07

Added

  • Exporting dwi files is now possible

Changed

  • PD and dwi were added to suffix list in the GUI

Fixed

  • Fix setting session label from sequence name
  • Include acq label in fmap and anat file names
  • Properly format paths to dcm2niix and BIDS root (specified through the file selection window) if they contain spaces

[0.4.0] - 2018-02-10

Added

  • Dataset description now has a dedicated popover, where all fields can be filled
  • Some tooltips & window titles

Changed

  • Setting subject and session rules is now done in one sweep (simpler and more intuitive)

[0.3.1] - 2018-02-02

Changed

  • Updated the version number
  • Updated this changelog

[0.3.0] - 2018-02-02

Added

  • Session label can be entered by user or taken from ether subject name or series name using regular expressions.
  • Subjects can be renamed using regular expressions.
  • Acq label can be added

Changed

  • Session label no longer can be filled in the table, but it now has a dedicated popover.
  • T2map was added to suffix list in the GUI

[0.2.0] - 2018-01-21

Added

  • New input field for the dataset name in the GUI.
  • Creation of the dataset_description.json file with basic (obligatory) contents.
  • Removal of JSON sidecars for fieldmap magnitude images.

Changed

  • Fieldmap files now don't have the _e2 suffix from dcm2niix.
  • General Mapping Window task column was changed to task name column, and the task label is now derived from its content by removing non-alphanumeric characters (rather than taken literally).

[0.1.1] - 2018-01-18

Added

  • Make the temporary folder hidden (bids_root/.dicom), clear it during use and remove after export ends.
  • Fix links in README.

[0.1] - 2018-01-10

Added

  • All the functionality in its first released version.