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malevnc (development version)

malevnc 0.3.1

  • make manc:v1.2.1 the public default
  • fix bug in reading meshes for id=100000
  • Feature/flexible url shortening by @jefferis in #70
  • doc polishing by @jefferis in #71

Full Changelog: https://github.com/natverse/malevnc/compare/v0.3...v0.3.1

malevnc 0.3

Version 0.3 provides stable access to the public manc data release.

  • support annotating with alternative clio user by @jefferis in #68
  • support for 64 bit ids in manc_annotate_body by @jefferis in #69
  • Update MANC.nerves to 35 meshes and update cols / docs for nerve meshes
  • Respect show.extra even for long id lists (d25fdfd6e9e8a4d7032a4ab964eee8ec30181687)
  • support for meshes with public manc release
  • Respect show.extra even for long id lists (d25fdfd6e9e8a4d7032a4ab964eee8ec30181687)

Full Changelog: https://github.com/natverse/malevnc/compare/v0.2.9...v0.3

malevnc 0.2.9

This is a major release providing support for the publication of the [MANC connectome] (https://www.janelia.org/project-team/flyem/manc-connectome). We expect to bump to v0.3 when all changes have stabilised.

  • Feature/neuron units by @jefferis in #60
  • Feature/manc 1.0 by @jefferis in #65
  • improved support for JRC xforms by @jefferis in #66
  • Test/actionsv3 by @jefferis in #67

malevnc 0.2.8

malevnc 0.2.7

What's Changed

  • Add flyem_shorten_url(), flyem_expand_url() by @jefferis in #54

  • manc_connection_table() defaults to selected neuprint metadata

  • MANC.tracts meshes object added by @dokato in #59

  • Added download_manc_registrations() to download bridging registrations MANC <> JRC2018VNCU/M/F by @dokato in #58

  • Add colour_leg_muscles() by @jefferis in #62

  • New Clio query parsing (for manc_annotate_body) parametrized by @dokato in #55 Also provides support for malecns annotation

  • read options(malevnc.dataset) in clio_version (mostly for malecns)

  • Critical fix to clio_set_token() by @dokato in #56

  • fix bug in manc_meta() due to retired instance field by @jefferis in e6035ad31e7b3d75d7395079c6821d62a8933922

  • Retire manc_set_lrgroup() We will now just set the group column directly via the clio interface. No need to use DVID / set instance values / sides etc.

Full Changelog: https://github.com/flyconnectome/malevnc/compare/v0.2.6...v0.2.7

malevnc 0.2.6

What's Changed

  • New test store address by @dokato in #49
  • More options added to manc scene by @dokato in #50
  • ENH: force option added to clio_token by @dokato in #51
  • Clio set token function added by @dokato in #52
  • manc_get supports new Clio API by @dokato in #53

Full Changelog: https://github.com/flyconnectome/malevnc/compare/v0.2.3...v0.2.6

malevnc 0.2.5

  • Fix manc_set_dvid_instance() for >1 input ids

malevnc 0.2.4

  • update manc_set_dvid_instance() to cope with synonyms

malevnc 0.2.3

  • add manc_view3d() function with standard views based on symmetric MANC template.

malevnc 0.2.2

  • Factor out and export low level manc_set_dvid_annotations() function.
  • Export manc_set_dvid_instance() and teach it to set instance/type and corresponding users for one or more body ids.

malevnc 0.2.1

  • Updated manc scene links by @dokato in #42
  • Fix point annotation dataset (e.g. for use by malecns) by @jefferis in #44

Full Changelog: https://github.com/flyconnectome/malevnc/compare/v0.2.0...v0.2.1

malevnc 0.2.0

  • WIP: simplified compute_clio_delta and remove NAs by @dokato in #30
  • Add manc_leg_summary/manc_side_summary by @jefferis in #31
  • Fix/dvid nodes by @jefferis in #32
  • MANC nerve mesh added by @dokato in #25
  • Quck fix manc meta by @dokato in #33
  • Fix handling of clio int64 bodyids by @jefferis in #34
  • Feature/prepare mcns by @jefferis in #35
  • don't update bodyids in manc meta by @jefferis in #39
  • Use non-default oauth app when talking to google by @jefferis in #40

Full Changelog: https://github.com/flyconnectome/malevnc/compare/v0.1.2...v0.2.0

malevnc 0.1.2

  • updatebodyids - backward compatibility by @dokato in #27

Full Changelog: https://github.com/flyconnectome/malevnc/compare/v0.1.1...v0.1.2

malevnc 0.1.1

What's Changed

  • Add support for reading clio store body annotations by @jefferis in #3
  • ellipsis passed to mirror_brain in mirror_manc by @dokato in #5
  • manc tissue surface added by @dokato in #6
  • handling missing values by @dokato in #7
  • Use long-lived clio token by default by @jefferis in #9
  • Fix/manc read neurons missing by @jefferis in #10
  • Feature/clio annotate bodies by @jefferis in #14
  • symmetrized tissue surface added by @dokato in #15
  • randomise the id used for body annotation tests by @jefferis in #17
  • Feature/new soma info by @jefferis in #18
  • Update manc annotate body by @dokato in #19
  • manc_set_lrgroup accepts partial changes by @dokato in #22
  • Fixed dvidtools and tests added by @dokato in #24
  • fix in manc_meta when setting dvid_group by @dokato in #26
  • Added a NEWS.md file to track changes to the package.

Full Changelog: https://github.com/flyconnectome/malevnc/commits/v0.1.1

malevnc 0.1

  • first version