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Fix imaging metadata for v6.1 #710

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1 of 4 tasks
inodb opened this issue Nov 5, 2024 · 1 comment
Open
1 of 4 tasks

Fix imaging metadata for v6.1 #710

inodb opened this issue Nov 5, 2024 · 1 comment
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@inodb
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inodb commented Nov 5, 2024

  • There's still an open ticket to submit updated imaging metadata with channel info: https://sagebionetworks.jira.com/browse/HTAN-557
    • We might also want to update the imaging assay from CyCIF to Vectra and Comet? CC @adamjtaylor
  • Double check new whether new Vanderbilt data should be included in this study:
  • Bigquery table v6.1 needs to be updated to include (scRNASeq and imaging). After that we can replace the currently manually edited v6.1 files. CC @PozhidayevaDarya.
    syn61372368,2
    syn62089682,1
    syn62090170,1
    syn62061520,3
    syn63387198,1
    syn63942276,1
    
@inodb inodb added the bug Something isn't working label Nov 5, 2024
@PozhidayevaDarya
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PozhidayevaDarya commented Nov 5, 2024

Updating here on the BQ v6.1 tables.
The tables should now be correct and the v6.1 entities and metadata have show the manifests:
syn62090170
syn62089682
syn61372368
syn62061520
Only ones which are missing now are:
syn63942276
syn63387198

These pertain to missing channel metadata for comet. They were included in R6.1 but we are waiting for them to be provided.

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